Gene annotation
| Transcriptome id | Sobic.006G235100.1 |
|---|---|
| Synonym | |
| Functional annotation | expressed protein |
| UniProt | A0A1B6PNI3 |
| Pfam | - |
| Panther DB | - |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os04g54620.1 : expressed protein |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G502400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed | - |
| 2 | Sobic.006G007900 | SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed | - |
| 3 | Sobic.001G313600 | heavy metal-associated domain containing protein, expressed | - |
| 4 | Sobic.009G184000 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 5 | Sobic.005G107900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed | - |
| 6 | Sobic.003G442100 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed | - |
| 7 | Sobic.004G141100 | Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed | K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase |
| 8 | Sobic.006G075400 | U-box domain-containing protein, putative, expressed | - |
| 9 | Sobic.003G432700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed | - |
| 10 | Sobic.003G043600 | BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed | - |
| 11 | Sobic.005G086600 | O-methyltransferase, putative, expressed | - |
| 12 | Sobic.010G082600 | EF hand family protein, putative, expressed | - |
| 13 | Sobic.006G008000 | O-methyltransferase, putative, expressed | - |
| 14 | Sobic.007G017500 | FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed | - |
| 15 | Sobic.009G188000 | NADPH-dependent FMN reductase domain containing protein, expressed | K03809: NAD(P)H dehydrogenase (quinone) |
| 16 | Sobic.001G259900 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 17 | Sobic.007G169700 | inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed | K01240: uridine nucleosidase |
| 18 | Sobic.003G268600 | - | - |
| 19 | Sobic.008G066401 | - | - |
| 20 | Sobic.001G310600 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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