Gene annotation
Transcriptome id Sobic.007G169700.2,Sobic.007G169700.1,Sobic.007G169700.3
Synonym URH1, Sb07g024220
Functional annotation inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
UniProt A0A1B6PI87 , A0A1B6PI89
Pfam PF01156
Panther DB PTHR12304 PTHR12304:SF1
NCBI CDD KOG2938; Predicted inosine-uridine preferring nucleoside hydrolase
KEGG Orthology K01240; uridine nucleosidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36310 : uridine-ribohydrolase 1
RAP-DB (Rice) LOC_Os08g44370.1 : inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a030562 , Zm00025a005610
Brachypodium KQJ91584 , PNT65196 , KQJ99352 , KQJ99353
Barley HORVU7Hr1G059050.8 , HORVU7Hr1G059050.9 , HORVU7Hr1G059050.1 , HORVU7Hr1G059050.2 , HORVU7Hr1G059050.3 , HORVU7Hr1G059050.4 , HORVU7Hr1G059050.5 , HORVU7Hr1G059050.6 , HORVU7Hr1G059050.7 , HORVU7Hr1G059050.10
Wheat TraesCS7D02G278400 , TraesCS7A02G278600 , TraesCS7A02G278600 , TraesCS7B02G176500 , TraesCS7B02G176500 , TraesCS7B02G176500 , TraesCS7B02G176500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
2 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.008G066401 - -
4 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
5 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.001G138600 VQ domain containing protein, putative, expressed -
7 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.003G043500 - -
9 Sobic.006G235100 expressed protein -
10 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
11 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
12 Sobic.006G054800 "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in stay green (QSTG1_6) "(PubMedID : 24655390)@Glycerophosphodiester phosphodiesterase ( At)(PubMedID : 27208977)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
13 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
14 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
15 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
16 Sobic.001G310600 expressed protein -
17 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
18 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
19 Sobic.003G362700 cytochrome P450, putative, expressed -
20 Sobic.009G145600 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic007G169700 Sobic007G169700 Sobic009G184000 Sobic009G184000 Sobic007G169700--Sobic009G184000 Sobic001G112200 Sobic001G112200 Sobic007G169700--Sobic001G112200 Sobic008G066401 Sobic008G066401 Sobic007G169700--Sobic008G066401 Sobic003G432700 Sobic003G432700 Sobic007G169700--Sobic003G432700 Sobic009G145700 Sobic009G145700 Sobic007G169700--Sobic009G145700 Sobic001G138600 Sobic001G138600 Sobic007G169700--Sobic001G138600 Sobic001G318700 Sobic001G318700 Sobic007G169700--Sobic001G318700 Sobic003G043500 Sobic003G043500 Sobic007G169700--Sobic003G043500 Sobic006G235100 Sobic006G235100 Sobic007G169700--Sobic006G235100 Sobic009G184000--Sobic001G112200 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic001G502400 Sobic001G502400 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic009G184000--Sobic003G432700 Sobic009G184000--Sobic001G138600 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic001G112200--Sobic009G184000 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic001G112200--Sobic003G369100 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G310600 Sobic001G310600 Sobic001G112200--Sobic001G310600 Sobic008G066401--Sobic009G145700 Sobic009G145600 Sobic009G145600 Sobic008G066401--Sobic009G145600 Sobic008G066200 Sobic008G066200 Sobic008G066401--Sobic008G066200 Sobic002G012500 Sobic002G012500 Sobic008G066401--Sobic002G012500 Sobic008G066401--Sobic007G169700 Sobic008G066401--Sobic009G184000 Sobic006G008000 Sobic006G008000 Sobic008G066401--Sobic006G008000 Sobic008G066401--Sobic003G043500 Sobic003G362700 Sobic003G362700 Sobic008G066401--Sobic003G362700 Sobic005G107900 Sobic005G107900 Sobic003G432700--Sobic005G107900 Sobic003G432700--Sobic001G502400 Sobic003G432700--Sobic003G228900 Sobic005G011300 Sobic005G011300 Sobic003G432700--Sobic005G011300 Sobic001G313600 Sobic001G313600 Sobic003G432700--Sobic001G313600 Sobic003G432700--Sobic009G184000 Sobic006G075400 Sobic006G075400 Sobic003G432700--Sobic006G075400 Sobic001G169500 Sobic001G169500 Sobic003G432700--Sobic001G169500 Sobic003G432700--Sobic007G169700 Sobic009G145700--Sobic009G145600 Sobic009G145700--Sobic008G066401 Sobic009G145700--Sobic008G066200 Sobic009G145700--Sobic006G008000 Sobic009G145700--Sobic001G112200 Sobic003G043600 Sobic003G043600 Sobic009G145700--Sobic003G043600 Sobic009G145700--Sobic003G043500 Sobic009G145700--Sobic009G184000 Sobic003G079200 Sobic003G079200 Sobic009G145700--Sobic003G079200 Sobic003G382800 Sobic003G382800 Sobic001G138600--Sobic003G382800 Sobic001G138600--Sobic001G112200 Sobic004G141200 Sobic004G141200 Sobic001G138600--Sobic004G141200 Sobic001G138600--Sobic003G369100 Sobic001G138600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G138600--Sobic001G079300 Sobic001G138600--Sobic007G074000 Sobic001G459800 Sobic001G459800 Sobic001G138600--Sobic001G459800 Sobic001G391500 Sobic001G391500 Sobic001G138600--Sobic001G391500 Sobic001G318700--Sobic001G112200 Sobic001G018300 Sobic001G018300 Sobic001G318700--Sobic001G018300 Sobic004G243100 Sobic004G243100 Sobic001G318700--Sobic004G243100 Sobic002G192000 Sobic002G192000 Sobic001G318700--Sobic002G192000 Sobic003G303100 Sobic003G303100 Sobic001G318700--Sobic003G303100 Sobic002G251000 Sobic002G251000 Sobic001G318700--Sobic002G251000 Sobic001G140900 Sobic001G140900 Sobic001G318700--Sobic001G140900 Sobic001G318700--Sobic006G075400 Sobic001G481100 Sobic001G481100 Sobic001G318700--Sobic001G481100 Sobic003G043500--Sobic009G145600 Sobic003G043500--Sobic008G066401 Sobic003G043500--Sobic009G145700 Sobic006G054800 Sobic006G054800 Sobic003G043500--Sobic006G054800 Sobic003G043500--Sobic007G169700 Sobic008G139600 Sobic008G139600 Sobic003G043500--Sobic008G139600 Sobic004G245700 Sobic004G245700 Sobic003G043500--Sobic004G245700 Sobic003G043500--Sobic001G112200 Sobic003G043500--Sobic009G184000 Sobic006G235100--Sobic001G502400 Sobic006G007900 Sobic006G007900 Sobic006G235100--Sobic006G007900 Sobic006G235100--Sobic001G313600 Sobic006G235100--Sobic009G184000 Sobic006G235100--Sobic005G107900 Sobic003G442100 Sobic003G442100 Sobic006G235100--Sobic003G442100 Sobic004G141100 Sobic004G141100 Sobic006G235100--Sobic004G141100 Sobic006G235100--Sobic006G075400 Sobic006G235100--Sobic003G432700
Octagon: transcription factors


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