Gene annotation
| Transcriptome id | Sobic.001G502400.1 |
|---|---|
| Synonym | Sb01g046930 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) RING-H2 finger protein ATL3F, putative, expressed |
| UniProt | C5WXW3 |
| Pfam | PF13639 |
| Panther DB | PTHR14155 PTHR14155:SF139 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008270; zinc ion binding GO:0005515protein binding |
Orthologs (automatic annotation)
| TAIR | AT1G04360 : RING/U-box superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g05570.1 : RING-H2 finger protein ATL3F, putative, expressed |
| MaizeGDB (Corn) | Zm00025a000667 , Zm00025a000669 , Zm00025a005551 |
| Brachypodium | KQK23629 , PNT66465 |
| Barley | HORVU4Hr1G080250.1 , HORVU7Hr1G027080.2 , HORVU7Hr1G027080.3 , HORVU7Hr1G027080.1 , HORVU7Hr1G027080.4 , HORVU4Hr1G080280.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G107900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed | - |
| 2 | Sobic.001G313600 | heavy metal-associated domain containing protein, expressed | - |
| 3 | Sobic.006G235100 | expressed protein | - |
| 4 | Sobic.003G432700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed | - |
| 5 | Sobic.009G184000 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 6 | Sobic.006G075400 | U-box domain-containing protein, putative, expressed | - |
| 7 | Sobic.009G188000 | NADPH-dependent FMN reductase domain containing protein, expressed | K03809: NAD(P)H dehydrogenase (quinone) |
| 8 | Sobic.005G011300 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 9 | Sobic.006G007900 | SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed | - |
| 10 | Sobic.001G310600 | expressed protein | - |
| 11 | Sobic.003G228900 | cytochrome P450 72A1, putative, expressed | - |
| 12 | Sobic.003G260300 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 13 | Sobic.003G043600 | BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed | - |
| 14 | Sobic.003G442100 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed | - |
| 15 | Sobic.006G132900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.007G017500 | FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed | - |
| 17 | Sobic.007G169700 | inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed | K01240: uridine nucleosidase |
| 18 | Sobic.003G084400 | ZOS1-03 - C2H2 zinc finger protein, expressed | - |
| 19 | Sobic.001G112200 | LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 20 | Sobic.001G079300 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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