Gene annotation
Transcriptome id Sobic.006G007900.1
Synonym SbROMT3, SbOMT3;O-methyltransferase, SbOMT3;resveratrol O-methyltransaferases, SbROMT3;O-methyltransaferases, Sb06g000820, 5-pentadecatrienyl resorcinol O-methyltransferase, sbOMT3;resveratrol O-methyltransaferases
Functional annotation SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs. (PubMedID : 17998204)
"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates" (PubMedID : 21902799)
Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli. (PubMedID : 24267561)
"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene" (PubMedID : 25033820)
Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli. (PubMedID : 25715927)
O-methyltransferase, putative, expressed
UniProt A8QW53
Pfam PF08100 PF00891
Panther DB PTHR11746 PTHR11746:SF86
NCBI CDD KOG3178; Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases
KEGG Orthology -
Gene Ontology GO:0008171; O-methyltransferase activity


Orthologs (automatic annotation)
TAIR AT5G54160 : O-methyltransferase 1
RAP-DB (Rice) LOC_Os05g43940.1 : O-methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a002685 , Zm00025a002686 , Zm00025a002689 , Zm00025a013023
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G235100 expressed protein -
2 Sobic.001G259400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
3 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
4 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
5 Sobic.007G122800 expressed protein -
6 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
7 Sobic.008G066401 - -
8 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
9 Sobic.005G086600 O-methyltransferase, putative, expressed -
10 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -
11 Sobic.004G191400 - -
12 Sobic.003G268600 - -
13 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
14 Sobic.004G191300 - -
15 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
16 Sobic.006G008000 O-methyltransferase, putative, expressed -
17 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
19 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.006G075400 U-box domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G007900 Sobic006G007900 Sobic006G235100 Sobic006G235100 Sobic006G007900--Sobic006G235100 Sobic001G259400 Sobic001G259400 Sobic006G007900--Sobic001G259400 Sobic003G442100 Sobic003G442100 Sobic006G007900--Sobic003G442100 Sobic009G184000 Sobic009G184000 Sobic006G007900--Sobic009G184000 Sobic007G122800 Sobic007G122800 Sobic006G007900--Sobic007G122800 Sobic001G259900 Sobic001G259900 Sobic006G007900--Sobic001G259900 Sobic008G066401 Sobic008G066401 Sobic006G007900--Sobic008G066401 Sobic001G502400 Sobic001G502400 Sobic006G007900--Sobic001G502400 Sobic005G086600 Sobic005G086600 Sobic006G007900--Sobic005G086600 Sobic006G235100--Sobic001G502400 Sobic006G235100--Sobic006G007900 Sobic001G313600 Sobic001G313600 Sobic006G235100--Sobic001G313600 Sobic006G235100--Sobic009G184000 Sobic005G107900 Sobic005G107900 Sobic006G235100--Sobic005G107900 Sobic006G235100--Sobic003G442100 Sobic004G141100 Sobic004G141100 Sobic006G235100--Sobic004G141100 Sobic006G075400 Sobic006G075400 Sobic006G235100--Sobic006G075400 Sobic003G432700 Sobic003G432700 Sobic006G235100--Sobic003G432700 Sobic002G012500 Sobic002G012500 Sobic001G259400--Sobic002G012500 Sobic001G259400--Sobic006G007900 Sobic001G259400--Sobic008G066401 Sobic001G259400--Sobic005G086600 Sobic004G064500 Sobic004G064500 Sobic001G259400--Sobic004G064500 Sobic003G079200 Sobic003G079200 Sobic001G259400--Sobic003G079200 Sobic008G066200 Sobic008G066200 Sobic001G259400--Sobic008G066200 Sobic006G008000 Sobic006G008000 Sobic001G259400--Sobic006G008000 Sobic008G158600 Sobic008G158600 Sobic001G259400--Sobic008G158600 Sobic003G268600 Sobic003G268600 Sobic003G442100--Sobic003G268600 Sobic001G310600 Sobic001G310600 Sobic003G442100--Sobic001G310600 Sobic003G043600 Sobic003G043600 Sobic003G442100--Sobic003G043600 Sobic003G442100--Sobic006G235100 Sobic003G442100--Sobic001G259900 Sobic003G442100--Sobic006G007900 Sobic004G191400 Sobic004G191400 Sobic003G442100--Sobic004G191400 Sobic003G442100--Sobic006G075400 Sobic003G442100--Sobic005G086600 Sobic001G112200 Sobic001G112200 Sobic009G184000--Sobic001G112200 Sobic007G169700 Sobic007G169700 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic009G184000--Sobic003G432700 Sobic001G138600 Sobic001G138600 Sobic009G184000--Sobic001G138600 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic002G358300 Sobic002G358300 Sobic007G122800--Sobic002G358300 Sobic004G308900 Sobic004G308900 Sobic007G122800--Sobic004G308900 Sobic007G122800--Sobic004G191400 Sobic004G294400 Sobic004G294400 Sobic007G122800--Sobic004G294400 Sobic004G191300 Sobic004G191300 Sobic007G122800--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic007G122800--Sobic001G195200 Sobic007G122800--Sobic006G007900 Sobic009G122400 Sobic009G122400 Sobic007G122800--Sobic009G122400 Sobic007G122800--Sobic003G268600 Sobic001G259900--Sobic003G442100 Sobic001G259900--Sobic006G007900 Sobic009G198600 Sobic009G198600 Sobic001G259900--Sobic009G198600 Sobic009G141500 Sobic009G141500 Sobic001G259900--Sobic009G141500 Sobic001G259900--Sobic009G184000 Sobic001G259900--Sobic006G235100 Sobic001G259900--Sobic004G191400 Sobic001G259900--Sobic001G310600 Sobic001G079300 Sobic001G079300 Sobic001G259900--Sobic001G079300 Sobic009G145700 Sobic009G145700 Sobic008G066401--Sobic009G145700 Sobic009G145600 Sobic009G145600 Sobic008G066401--Sobic009G145600 Sobic008G066401--Sobic008G066200 Sobic008G066401--Sobic002G012500 Sobic008G066401--Sobic007G169700 Sobic008G066401--Sobic009G184000 Sobic008G066401--Sobic006G008000 Sobic003G043500 Sobic003G043500 Sobic008G066401--Sobic003G043500 Sobic003G362700 Sobic003G362700 Sobic008G066401--Sobic003G362700 Sobic001G502400--Sobic005G107900 Sobic001G502400--Sobic001G313600 Sobic001G502400--Sobic006G235100 Sobic001G502400--Sobic003G432700 Sobic001G502400--Sobic009G184000 Sobic001G502400--Sobic006G075400 Sobic009G188000 Sobic009G188000 Sobic001G502400--Sobic009G188000 Sobic005G011300 Sobic005G011300 Sobic001G502400--Sobic005G011300 Sobic001G502400--Sobic006G007900 Sobic005G086600--Sobic006G008000 Sobic005G086600--Sobic003G268600 Sobic003G073380 Sobic003G073380 Sobic005G086600--Sobic003G073380 Sobic005G086600--Sobic003G079200 Sobic005G086600--Sobic006G235100 Sobic005G086600--Sobic006G007900 Sobic005G086600--Sobic003G442100 Sobic004G161751 Sobic004G161751 Sobic005G086600--Sobic004G161751 Sobic005G086600--Sobic001G259400
Octagon: transcription factors


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