Gene annotation
Transcriptome id Sobic.001G259900.1
Synonym JAZ1, TIFY10A, JAZ, Sb01g023431
Functional annotation tran- scriptional repressor JASMONATE ZIM-DOMAIN (PubMedID : 25711704)
ZIM domain containing protein, putative, expressed
UniProt A0A1B6QL30
Pfam PF09425 PF06200
Panther DB PTHR33077 PTHR33077:SF15
NCBI CDD -
KEGG Orthology K13464; jasmonate ZIM domain-containing protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19180 : jasmonate-zim-domain protein 1
RAP-DB (Rice) LOC_Os10g25290.1 : ZIM domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017880
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
2 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
3 Sobic.009G198600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.009G141500 Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659925)@ethylene-responsive transcription factor ERF020, putative, expressed -
5 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
6 Sobic.006G235100 expressed protein -
7 Sobic.004G191400 - -
8 Sobic.001G310600 expressed protein -
9 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
11 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
12 Sobic.008G066401 - -
13 Sobic.009G192600 Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
14 Sobic.010G225251 - -
15 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
16 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.006G101100 expressed protein -
18 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
19 Sobic.003G268600 - -
20 Sobic.010G082600 EF hand family protein, putative, expressed -


Gene co-expression network
sample Sobic001G259900 Sobic001G259900 Sobic003G442100 Sobic003G442100 Sobic001G259900--Sobic003G442100 Sobic006G007900 Sobic006G007900 Sobic001G259900--Sobic006G007900 Sobic009G198600 Sobic009G198600 Sobic001G259900--Sobic009G198600 Sobic009G141500 Sobic009G141500 Sobic001G259900--Sobic009G141500 Sobic009G184000 Sobic009G184000 Sobic001G259900--Sobic009G184000 Sobic006G235100 Sobic006G235100 Sobic001G259900--Sobic006G235100 Sobic004G191400 Sobic004G191400 Sobic001G259900--Sobic004G191400 Sobic001G310600 Sobic001G310600 Sobic001G259900--Sobic001G310600 Sobic001G079300 Sobic001G079300 Sobic001G259900--Sobic001G079300 Sobic003G268600 Sobic003G268600 Sobic003G442100--Sobic003G268600 Sobic003G442100--Sobic001G310600 Sobic003G043600 Sobic003G043600 Sobic003G442100--Sobic003G043600 Sobic003G442100--Sobic006G235100 Sobic003G442100--Sobic001G259900 Sobic003G442100--Sobic006G007900 Sobic003G442100--Sobic004G191400 Sobic006G075400 Sobic006G075400 Sobic003G442100--Sobic006G075400 Sobic005G086600 Sobic005G086600 Sobic003G442100--Sobic005G086600 Sobic006G007900--Sobic006G235100 Sobic001G259400 Sobic001G259400 Sobic006G007900--Sobic001G259400 Sobic006G007900--Sobic003G442100 Sobic006G007900--Sobic009G184000 Sobic007G122800 Sobic007G122800 Sobic006G007900--Sobic007G122800 Sobic006G007900--Sobic001G259900 Sobic008G066401 Sobic008G066401 Sobic006G007900--Sobic008G066401 Sobic001G502400 Sobic001G502400 Sobic006G007900--Sobic001G502400 Sobic006G007900--Sobic005G086600 Sobic009G198600--Sobic001G259900 Sobic009G198600--Sobic003G442100 Sobic009G198600--Sobic001G310600 Sobic008G044300 Sobic008G044300 Sobic009G198600--Sobic008G044300 Sobic005G186100 Sobic005G186100 Sobic009G198600--Sobic005G186100 Sobic009G198600--Sobic009G184000 Sobic009G198600--Sobic001G502400 Sobic009G198600--Sobic006G235100 Sobic005G139075 Sobic005G139075 Sobic009G198600--Sobic005G139075 Sobic009G141500--Sobic001G259900 Sobic001G259700 Sobic001G259700 Sobic009G141500--Sobic001G259700 Sobic002G328400 Sobic002G328400 Sobic009G141500--Sobic002G328400 Sobic009G141500--Sobic001G079300 Sobic009G141500--Sobic004G191400 Sobic001G138600 Sobic001G138600 Sobic009G141500--Sobic001G138600 Sobic009G141500--Sobic005G186100 Sobic004G169200 Sobic004G169200 Sobic009G141500--Sobic004G169200 Sobic009G141500--Sobic006G007900 Sobic001G112200 Sobic001G112200 Sobic009G184000--Sobic001G112200 Sobic007G169700 Sobic007G169700 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic003G432700 Sobic003G432700 Sobic009G184000--Sobic003G432700 Sobic009G184000--Sobic001G138600 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic006G235100--Sobic001G502400 Sobic006G235100--Sobic006G007900 Sobic001G313600 Sobic001G313600 Sobic006G235100--Sobic001G313600 Sobic006G235100--Sobic009G184000 Sobic005G107900 Sobic005G107900 Sobic006G235100--Sobic005G107900 Sobic006G235100--Sobic003G442100 Sobic004G141100 Sobic004G141100 Sobic006G235100--Sobic004G141100 Sobic006G235100--Sobic006G075400 Sobic006G235100--Sobic003G432700 Sobic004G191300 Sobic004G191300 Sobic004G191400--Sobic004G191300 Sobic004G191400--Sobic001G079300 Sobic009G122400 Sobic009G122400 Sobic004G191400--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G191400--Sobic010G209200 Sobic004G191400--Sobic007G122800 Sobic004G191400--Sobic003G228900 Sobic004G308900 Sobic004G308900 Sobic004G191400--Sobic004G308900 Sobic003G428700 Sobic003G428700 Sobic004G191400--Sobic003G428700 Sobic004G294400 Sobic004G294400 Sobic004G191400--Sobic004G294400 Sobic001G310600--Sobic003G442100 Sobic001G310600--Sobic003G043600 Sobic001G310600--Sobic001G112200 Sobic001G310600--Sobic006G075400 Sobic001G310600--Sobic001G502400 Sobic001G318700 Sobic001G318700 Sobic001G310600--Sobic001G318700 Sobic002G336600 Sobic002G336600 Sobic001G310600--Sobic002G336600 Sobic001G310600--Sobic009G184000 Sobic001G310600--Sobic001G079300 Sobic001G079300--Sobic004G191400 Sobic001G079300--Sobic004G191300 Sobic001G079300--Sobic010G209200 Sobic001G079300--Sobic003G228900 Sobic001G079300--Sobic001G138600 Sobic001G079300--Sobic009G122400 Sobic003G260300 Sobic003G260300 Sobic001G079300--Sobic003G260300 Sobic004G141200 Sobic004G141200 Sobic001G079300--Sobic004G141200 Sobic001G079300--Sobic009G184000
Octagon: transcription factors


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