Gene annotation
Transcriptome id Sobic.009G198600.1
Synonym Sb09g025630
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
expressed protein
UniProt C5Z0Z4
Pfam -
Panther DB PTHR33782 PTHR33782:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01300 : -
RAP-DB (Rice) LOC_Os05g44060.1 : expressed protein
MaizeGDB (Corn) Zm00025a044234
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G198600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
2 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
3 Sobic.001G310600 expressed protein -
4 Sobic.008G044300 U-box domain-containing protein, putative, expressed -
5 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
6 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
7 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
8 Sobic.006G235100 expressed protein -
9 Sobic.005G139075 - -
10 Sobic.010G225251 - -
11 Sobic.009G141500 Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659925)@ethylene-responsive transcription factor ERF020, putative, expressed -
12 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
15 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
16 Sobic.004G191400 - -
17 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
18 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
19 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
20 Sobic.001G138600 VQ domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G198600 Sobic009G198600 Sobic001G259900 Sobic001G259900 Sobic009G198600--Sobic001G259900 Sobic003G442100 Sobic003G442100 Sobic009G198600--Sobic003G442100 Sobic001G310600 Sobic001G310600 Sobic009G198600--Sobic001G310600 Sobic008G044300 Sobic008G044300 Sobic009G198600--Sobic008G044300 Sobic005G186100 Sobic005G186100 Sobic009G198600--Sobic005G186100 Sobic009G184000 Sobic009G184000 Sobic009G198600--Sobic009G184000 Sobic001G502400 Sobic001G502400 Sobic009G198600--Sobic001G502400 Sobic006G235100 Sobic006G235100 Sobic009G198600--Sobic006G235100 Sobic005G139075 Sobic005G139075 Sobic009G198600--Sobic005G139075 Sobic001G259900--Sobic003G442100 Sobic006G007900 Sobic006G007900 Sobic001G259900--Sobic006G007900 Sobic001G259900--Sobic009G198600 Sobic009G141500 Sobic009G141500 Sobic001G259900--Sobic009G141500 Sobic001G259900--Sobic009G184000 Sobic001G259900--Sobic006G235100 Sobic004G191400 Sobic004G191400 Sobic001G259900--Sobic004G191400 Sobic001G259900--Sobic001G310600 Sobic001G079300 Sobic001G079300 Sobic001G259900--Sobic001G079300 Sobic003G268600 Sobic003G268600 Sobic003G442100--Sobic003G268600 Sobic003G442100--Sobic001G310600 Sobic003G043600 Sobic003G043600 Sobic003G442100--Sobic003G043600 Sobic003G442100--Sobic006G235100 Sobic003G442100--Sobic001G259900 Sobic003G442100--Sobic006G007900 Sobic003G442100--Sobic004G191400 Sobic006G075400 Sobic006G075400 Sobic003G442100--Sobic006G075400 Sobic005G086600 Sobic005G086600 Sobic003G442100--Sobic005G086600 Sobic001G310600--Sobic003G442100 Sobic001G310600--Sobic003G043600 Sobic001G112200 Sobic001G112200 Sobic001G310600--Sobic001G112200 Sobic001G310600--Sobic006G075400 Sobic001G310600--Sobic001G502400 Sobic001G318700 Sobic001G318700 Sobic001G310600--Sobic001G318700 Sobic002G336600 Sobic002G336600 Sobic001G310600--Sobic002G336600 Sobic001G310600--Sobic009G184000 Sobic001G310600--Sobic001G079300 Sobic008G044300--Sobic001G310600 Sobic003G041600 Sobic003G041600 Sobic008G044300--Sobic003G041600 Sobic009G221400 Sobic009G221400 Sobic008G044300--Sobic009G221400 Sobic008G044300--Sobic001G112200 Sobic003G364600 Sobic003G364600 Sobic008G044300--Sobic003G364600 Sobic008G044300--Sobic005G186100 Sobic001G279500 Sobic001G279500 Sobic008G044300--Sobic001G279500 Sobic010G225251 Sobic010G225251 Sobic008G044300--Sobic010G225251 Sobic002G338500 Sobic002G338500 Sobic008G044300--Sobic002G338500 Sobic001G138600 Sobic001G138600 Sobic005G186100--Sobic001G138600 Sobic005G186100--Sobic001G112200 Sobic006G056400 Sobic006G056400 Sobic005G186100--Sobic006G056400 Sobic002G333400 Sobic002G333400 Sobic005G186100--Sobic002G333400 Sobic005G186100--Sobic001G318700 Sobic003G228900 Sobic003G228900 Sobic005G186100--Sobic003G228900 Sobic001G481100 Sobic001G481100 Sobic005G186100--Sobic001G481100 Sobic005G186100--Sobic001G079300 Sobic005G186100--Sobic009G184000 Sobic009G184000--Sobic001G112200 Sobic007G169700 Sobic007G169700 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic009G184000--Sobic003G228900 Sobic003G432700 Sobic003G432700 Sobic009G184000--Sobic003G432700 Sobic009G184000--Sobic001G138600 Sobic008G066401 Sobic008G066401 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic005G107900 Sobic005G107900 Sobic001G502400--Sobic005G107900 Sobic001G313600 Sobic001G313600 Sobic001G502400--Sobic001G313600 Sobic001G502400--Sobic006G235100 Sobic001G502400--Sobic003G432700 Sobic001G502400--Sobic009G184000 Sobic001G502400--Sobic006G075400 Sobic009G188000 Sobic009G188000 Sobic001G502400--Sobic009G188000 Sobic005G011300 Sobic005G011300 Sobic001G502400--Sobic005G011300 Sobic001G502400--Sobic006G007900 Sobic006G235100--Sobic001G502400 Sobic006G235100--Sobic006G007900 Sobic006G235100--Sobic001G313600 Sobic006G235100--Sobic009G184000 Sobic006G235100--Sobic005G107900 Sobic006G235100--Sobic003G442100 Sobic004G141100 Sobic004G141100 Sobic006G235100--Sobic004G141100 Sobic006G235100--Sobic006G075400 Sobic006G235100--Sobic003G432700 Sobic002G314700 Sobic002G314700 Sobic005G139075--Sobic002G314700 Sobic005G139075--Sobic009G198600 Sobic005G139075--Sobic001G112200 Sobic005G139075--Sobic009G184000 Sobic009G145700 Sobic009G145700 Sobic005G139075--Sobic009G145700 Sobic003G362700 Sobic003G362700 Sobic005G139075--Sobic003G362700 Sobic005G139075--Sobic001G502400 Sobic005G139075--Sobic006G235100 Sobic008G139600 Sobic008G139600 Sobic005G139075--Sobic008G139600
Octagon: transcription factors


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