Gene annotation
Transcriptome id Sobic.009G141500.1
Synonym SbERF94;ethylene response factor 94, Sb09g020690, ethylene response factor 94, SbERF94
Functional annotation Not investigated (PubMedID : 23766026)
"SERF1(Ortholog in rice:Schmidt et al., 2013)" (PubMedID : 31659925)
ethylene-responsive transcription factor ERF020, putative, expressed
UniProt C5YY62
Pfam PF00847
Panther DB PTHR31985 PTHR31985:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G71520 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g66270.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043729 , Zm00025a051964
Brachypodium -
Barley HORVU3Hr1G090740.3 , HORVU3Hr1G090740.2 , HORVU3Hr1G090740.1 , HORVU1Hr1G056090.1 , HORVU0Hr1G018280.1 , HORVU1Hr1G064030.1 , HORVU1Hr1G064030.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
2 Sobic.001G259700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
3 Sobic.002G328400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.004G191400 - -
6 Sobic.001G138600 VQ domain containing protein, putative, expressed -
7 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
8 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
9 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
10 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
12 Sobic.004G191300 - -
13 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
14 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.009G192600 Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
16 Sobic.010G209200 WRKY28, expressed -
17 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
18 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
19 Sobic.007G122800 expressed protein -
20 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase


Gene co-expression network
sample Sobic009G141500 Sobic009G141500 Sobic001G259900 Sobic001G259900 Sobic009G141500--Sobic001G259900 Sobic001G259700 Sobic001G259700 Sobic009G141500--Sobic001G259700 Sobic002G328400 Sobic002G328400 Sobic009G141500--Sobic002G328400 Sobic001G079300 Sobic001G079300 Sobic009G141500--Sobic001G079300 Sobic004G191400 Sobic004G191400 Sobic009G141500--Sobic004G191400 Sobic001G138600 Sobic001G138600 Sobic009G141500--Sobic001G138600 Sobic005G186100 Sobic005G186100 Sobic009G141500--Sobic005G186100 Sobic004G169200 Sobic004G169200 Sobic009G141500--Sobic004G169200 Sobic006G007900 Sobic006G007900 Sobic009G141500--Sobic006G007900 Sobic003G442100 Sobic003G442100 Sobic001G259900--Sobic003G442100 Sobic001G259900--Sobic006G007900 Sobic009G198600 Sobic009G198600 Sobic001G259900--Sobic009G198600 Sobic001G259900--Sobic009G141500 Sobic009G184000 Sobic009G184000 Sobic001G259900--Sobic009G184000 Sobic006G235100 Sobic006G235100 Sobic001G259900--Sobic006G235100 Sobic001G259900--Sobic004G191400 Sobic001G310600 Sobic001G310600 Sobic001G259900--Sobic001G310600 Sobic001G259900--Sobic001G079300 Sobic006G263600 Sobic006G263600 Sobic001G259700--Sobic006G263600 Sobic001G259700--Sobic009G141500 Sobic001G259600 Sobic001G259600 Sobic001G259700--Sobic001G259600 Sobic001G259700--Sobic002G328400 Sobic001G259700--Sobic004G169200 Sobic001G259700--Sobic004G191400 Sobic001G449700 Sobic001G449700 Sobic001G259700--Sobic001G449700 Sobic002G405600 Sobic002G405600 Sobic001G259700--Sobic002G405600 Sobic001G259700--Sobic001G079300 Sobic002G328400--Sobic009G141500 Sobic002G328400--Sobic001G259700 Sobic003G265200 Sobic003G265200 Sobic002G328400--Sobic003G265200 Sobic002G328400--Sobic004G191400 Sobic003G260300 Sobic003G260300 Sobic002G328400--Sobic003G260300 Sobic002G328400--Sobic004G169200 Sobic002G328400--Sobic001G079300 Sobic002G328400--Sobic006G263600 Sobic001G431500 Sobic001G431500 Sobic002G328400--Sobic001G431500 Sobic001G079300--Sobic004G191400 Sobic004G191300 Sobic004G191300 Sobic001G079300--Sobic004G191300 Sobic010G209200 Sobic010G209200 Sobic001G079300--Sobic010G209200 Sobic003G228900 Sobic003G228900 Sobic001G079300--Sobic003G228900 Sobic001G079300--Sobic001G138600 Sobic009G122400 Sobic009G122400 Sobic001G079300--Sobic009G122400 Sobic001G079300--Sobic003G260300 Sobic004G141200 Sobic004G141200 Sobic001G079300--Sobic004G141200 Sobic001G079300--Sobic009G184000 Sobic004G191400--Sobic004G191300 Sobic004G191400--Sobic001G079300 Sobic004G191400--Sobic009G122400 Sobic004G191400--Sobic010G209200 Sobic007G122800 Sobic007G122800 Sobic004G191400--Sobic007G122800 Sobic004G191400--Sobic003G228900 Sobic004G308900 Sobic004G308900 Sobic004G191400--Sobic004G308900 Sobic003G428700 Sobic003G428700 Sobic004G191400--Sobic003G428700 Sobic004G294400 Sobic004G294400 Sobic004G191400--Sobic004G294400 Sobic003G382800 Sobic003G382800 Sobic001G138600--Sobic003G382800 Sobic001G112200 Sobic001G112200 Sobic001G138600--Sobic001G112200 Sobic001G138600--Sobic004G141200 Sobic003G369100 Sobic003G369100 Sobic001G138600--Sobic003G369100 Sobic001G138600--Sobic009G184000 Sobic001G138600--Sobic001G079300 Sobic007G074000 Sobic007G074000 Sobic001G138600--Sobic007G074000 Sobic001G459800 Sobic001G459800 Sobic001G138600--Sobic001G459800 Sobic001G391500 Sobic001G391500 Sobic001G138600--Sobic001G391500 Sobic005G186100--Sobic001G138600 Sobic005G186100--Sobic001G112200 Sobic006G056400 Sobic006G056400 Sobic005G186100--Sobic006G056400 Sobic002G333400 Sobic002G333400 Sobic005G186100--Sobic002G333400 Sobic001G318700 Sobic001G318700 Sobic005G186100--Sobic001G318700 Sobic005G186100--Sobic003G228900 Sobic001G481100 Sobic001G481100 Sobic005G186100--Sobic001G481100 Sobic005G186100--Sobic001G079300 Sobic005G186100--Sobic009G184000 Sobic002G395300 Sobic002G395300 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic004G169200--Sobic003G428700 Sobic004G169200--Sobic006G263600 Sobic004G169200--Sobic004G191400 Sobic004G169200--Sobic009G122400 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000 Sobic006G007900--Sobic006G235100 Sobic001G259400 Sobic001G259400 Sobic006G007900--Sobic001G259400 Sobic006G007900--Sobic003G442100 Sobic006G007900--Sobic009G184000 Sobic006G007900--Sobic007G122800 Sobic006G007900--Sobic001G259900 Sobic008G066401 Sobic008G066401 Sobic006G007900--Sobic008G066401 Sobic001G502400 Sobic001G502400 Sobic006G007900--Sobic001G502400 Sobic005G086600 Sobic005G086600 Sobic006G007900--Sobic005G086600
Octagon: transcription factors


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