Gene annotation
Transcriptome id Sobic.004G169200.1
Synonym PUB23, Sb04g022070
Functional annotation U-box domain-containing protein, putative, expressed
UniProt A0A1Z5RNY7
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF49
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G52450 : plant U-box 22
RAP-DB (Rice) LOC_Os02g33590.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009231 , Zm00025a020586
Brachypodium -
Barley HORVU6Hr1G089560.1 , HORVU6Hr1G089560.2 , HORVU6Hr1G089590.1 , HORVU6Hr1G089590.2 , HORVU6Hr1G034250.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
2 Sobic.002G358300 expressed protein -
3 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G191400 - -
6 Sobic.009G122400 expressed protein -
7 Sobic.010G209200 WRKY28, expressed -
8 Sobic.002G220000 expressed protein -
9 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
10 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
11 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
12 Sobic.004G308900 AP2 domain containing protein, expressed -
13 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
14 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
15 Sobic.001G481100 DUF581 domain containing protein, expressed -
16 Sobic.001G195200 cytochrome P450, putative, expressed -
17 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
18 Sobic.003G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.004G294400 expansin precursor, putative, expressed -
20 Sobic.002G282300 expressed protein -


Gene co-expression network
sample Sobic004G169200 Sobic004G169200 Sobic002G395300 Sobic002G395300 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic003G428700 Sobic003G428700 Sobic004G169200--Sobic003G428700 Sobic006G263600 Sobic006G263600 Sobic004G169200--Sobic006G263600 Sobic004G191400 Sobic004G191400 Sobic004G169200--Sobic004G191400 Sobic009G122400 Sobic009G122400 Sobic004G169200--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000 Sobic001G256700 Sobic001G256700 Sobic002G395300--Sobic001G256700 Sobic001G330100 Sobic001G330100 Sobic002G395300--Sobic001G330100 Sobic002G395300--Sobic004G169200 Sobic004G294400 Sobic004G294400 Sobic002G395300--Sobic004G294400 Sobic002G388900 Sobic002G388900 Sobic002G395300--Sobic002G388900 Sobic004G108200 Sobic004G108200 Sobic002G395300--Sobic004G108200 Sobic001G195200 Sobic001G195200 Sobic002G395300--Sobic001G195200 Sobic009G144700 Sobic009G144700 Sobic002G395300--Sobic009G144700 Sobic009G032000 Sobic009G032000 Sobic002G395300--Sobic009G032000 Sobic004G308900 Sobic004G308900 Sobic002G358300--Sobic004G308900 Sobic007G122800 Sobic007G122800 Sobic002G358300--Sobic007G122800 Sobic002G358300--Sobic001G195200 Sobic002G358300--Sobic009G032000 Sobic002G358300--Sobic004G191400 Sobic002G358300--Sobic004G169200 Sobic004G191300 Sobic004G191300 Sobic002G358300--Sobic004G191300 Sobic002G358300--Sobic002G395300 Sobic002G358300--Sobic004G294400 Sobic003G428700--Sobic009G122400 Sobic003G428700--Sobic010G209200 Sobic003G428700--Sobic004G191400 Sobic003G428700--Sobic004G169200 Sobic003G093000 Sobic003G093000 Sobic003G428700--Sobic003G093000 Sobic004G222500 Sobic004G222500 Sobic003G428700--Sobic004G222500 Sobic009G247900 Sobic009G247900 Sobic003G428700--Sobic009G247900 Sobic003G428700--Sobic002G220000 Sobic001G035100 Sobic001G035100 Sobic003G428700--Sobic001G035100 Sobic001G259700 Sobic001G259700 Sobic006G263600--Sobic001G259700 Sobic006G263600--Sobic004G169200 Sobic006G263600--Sobic009G247900 Sobic009G036000 Sobic009G036000 Sobic006G263600--Sobic009G036000 Sobic001G383700 Sobic001G383700 Sobic006G263600--Sobic001G383700 Sobic003G324400 Sobic003G324400 Sobic006G263600--Sobic003G324400 Sobic007G213800 Sobic007G213800 Sobic006G263600--Sobic007G213800 Sobic001G079300 Sobic001G079300 Sobic006G263600--Sobic001G079300 Sobic002G282300 Sobic002G282300 Sobic006G263600--Sobic002G282300 Sobic004G191400--Sobic004G191300 Sobic004G191400--Sobic001G079300 Sobic004G191400--Sobic009G122400 Sobic004G191400--Sobic010G209200 Sobic004G191400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G191400--Sobic003G228900 Sobic004G191400--Sobic004G308900 Sobic004G191400--Sobic003G428700 Sobic004G191400--Sobic004G294400 Sobic009G122400--Sobic004G191400 Sobic009G122400--Sobic010G209200 Sobic009G122400--Sobic004G191300 Sobic009G122400--Sobic003G428700 Sobic009G122400--Sobic003G228900 Sobic009G122400--Sobic001G079300 Sobic001G330400 Sobic001G330400 Sobic009G122400--Sobic001G330400 Sobic009G122400--Sobic001G256700 Sobic009G122400--Sobic002G388900 Sobic010G209200--Sobic009G122400 Sobic010G209200--Sobic004G191400 Sobic010G209200--Sobic003G428700 Sobic010G209200--Sobic003G228900 Sobic010G209200--Sobic001G079300 Sobic010G209200--Sobic004G191300 Sobic001G138600 Sobic001G138600 Sobic010G209200--Sobic001G138600 Sobic010G209200--Sobic007G213800 Sobic009G184000 Sobic009G184000 Sobic010G209200--Sobic009G184000 Sobic002G220000--Sobic003G093000 Sobic002G220000--Sobic001G035100 Sobic002G220000--Sobic001G330400 Sobic002G220000--Sobic003G428700 Sobic003G092900 Sobic003G092900 Sobic002G220000--Sobic003G092900 Sobic002G220000--Sobic009G122400 Sobic002G220000--Sobic004G169200 Sobic002G189100 Sobic002G189100 Sobic002G220000--Sobic002G189100 Sobic004G219800 Sobic004G219800 Sobic002G220000--Sobic004G219800 Sobic004G004500 Sobic004G004500 Sobic002G339000--Sobic004G004500 Sobic002G339000--Sobic001G256700 Sobic007G036900 Sobic007G036900 Sobic002G339000--Sobic007G036900 Sobic003G148300 Sobic003G148300 Sobic002G339000--Sobic003G148300 Sobic002G339000--Sobic001G195200 Sobic002G339000--Sobic004G169200 Sobic002G339000--Sobic004G108200 Sobic002G339000--Sobic002G395300 Sobic007G214600 Sobic007G214600 Sobic002G339000--Sobic007G214600
Octagon: transcription factors


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