Gene annotation
Transcriptome id Sobic.002G282300.1
Synonym Sb02g031530
Functional annotation expressed protein
UniProt C5X6Y4
Pfam -
Panther DB PTHR34779
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76070 : -
RAP-DB (Rice) LOC_Os09g37080.1 : expressed protein
MaizeGDB (Corn) Zm00025a049291 , Zm00025a014480
Brachypodium KQJ91278
Barley HORVU5Hr1G084700.1 , HORVU5Hr1G084700.2
Wheat -
Populus -


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cDNA sequences
Sobic.002G282300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G230900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
2 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
3 Sobic.001G205350 - -
4 Sobic.001G338600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
5 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
6 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
7 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
8 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
10 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G259600 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
12 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
13 Sobic.003G313800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
14 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
15 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
16 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
17 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
19 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
20 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic002G282300 Sobic002G282300 Sobic006G230900 Sobic006G230900 Sobic002G282300--Sobic006G230900 Sobic007G213800 Sobic007G213800 Sobic002G282300--Sobic007G213800 Sobic001G205350 Sobic001G205350 Sobic002G282300--Sobic001G205350 Sobic001G338600 Sobic001G338600 Sobic002G282300--Sobic001G338600 Sobic003G144700 Sobic003G144700 Sobic002G282300--Sobic003G144700 Sobic003G197200 Sobic003G197200 Sobic002G282300--Sobic003G197200 Sobic006G231200 Sobic006G231200 Sobic002G282300--Sobic006G231200 Sobic001G320900 Sobic001G320900 Sobic002G282300--Sobic001G320900 Sobic004G169200 Sobic004G169200 Sobic002G282300--Sobic004G169200 Sobic006G230900--Sobic006G231200 Sobic006G231100 Sobic006G231100 Sobic006G230900--Sobic006G231100 Sobic006G230900--Sobic002G282300 Sobic006G230900--Sobic007G213800 Sobic010G217800 Sobic010G217800 Sobic006G230900--Sobic010G217800 Sobic002G415600 Sobic002G415600 Sobic006G230900--Sobic002G415600 Sobic006G230900--Sobic003G144700 Sobic003G123600 Sobic003G123600 Sobic006G230900--Sobic003G123600 Sobic006G230900--Sobic003G197200 Sobic007G213800--Sobic003G144700 Sobic001G391500 Sobic001G391500 Sobic007G213800--Sobic001G391500 Sobic007G213800--Sobic002G282300 Sobic007G213800--Sobic006G230900 Sobic007G213800--Sobic003G197200 Sobic001G138600 Sobic001G138600 Sobic007G213800--Sobic001G138600 Sobic007G213800--Sobic006G231200 Sobic010G209200 Sobic010G209200 Sobic007G213800--Sobic010G209200 Sobic001G459800 Sobic001G459800 Sobic007G213800--Sobic001G459800 Sobic001G205350--Sobic002G282300 Sobic001G205350--Sobic006G230900 Sobic001G205350--Sobic007G213800 Sobic001G205350--Sobic004G169200 Sobic001G205350--Sobic001G338600 Sobic001G205350--Sobic006G231200 Sobic002G189100 Sobic002G189100 Sobic001G205350--Sobic002G189100 Sobic003G380900 Sobic003G380900 Sobic001G205350--Sobic003G380900 Sobic003G428700 Sobic003G428700 Sobic001G205350--Sobic003G428700 Sobic001G338600--Sobic002G282300 Sobic002G278500 Sobic002G278500 Sobic001G338600--Sobic002G278500 Sobic004G228900 Sobic004G228900 Sobic001G338600--Sobic004G228900 Sobic001G426000 Sobic001G426000 Sobic001G338600--Sobic001G426000 Sobic001G338600--Sobic001G205350 Sobic001G338600--Sobic006G230900 Sobic001G338600--Sobic003G144700 Sobic001G441100 Sobic001G441100 Sobic001G338600--Sobic001G441100 Sobic004G283500 Sobic004G283500 Sobic001G338600--Sobic004G283500 Sobic003G144700--Sobic003G197200 Sobic003G148600 Sobic003G148600 Sobic003G144700--Sobic003G148600 Sobic003G144700--Sobic007G213800 Sobic003G144700--Sobic001G320900 Sobic003G355100 Sobic003G355100 Sobic003G144700--Sobic003G355100 Sobic003G144700--Sobic001G391500 Sobic009G169000 Sobic009G169000 Sobic003G144700--Sobic009G169000 Sobic003G144700--Sobic003G123600 Sobic003G144700--Sobic006G230900 Sobic003G197200--Sobic003G148600 Sobic007G214600 Sobic007G214600 Sobic003G197200--Sobic007G214600 Sobic003G197200--Sobic003G355100 Sobic003G197200--Sobic003G144700 Sobic001G443800 Sobic001G443800 Sobic003G197200--Sobic001G443800 Sobic001G481300 Sobic001G481300 Sobic003G197200--Sobic001G481300 Sobic001G201200 Sobic001G201200 Sobic003G197200--Sobic001G201200 Sobic004G109600 Sobic004G109600 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600 Sobic006G231200--Sobic006G230900 Sobic006G231200--Sobic006G231100 Sobic006G231200--Sobic007G213800 Sobic006G231200--Sobic001G459800 Sobic006G231200--Sobic010G217800 Sobic006G231200--Sobic003G144700 Sobic006G267200 Sobic006G267200 Sobic006G231200--Sobic006G267200 Sobic006G231200--Sobic002G282300 Sobic006G231200--Sobic001G320900 Sobic009G036000 Sobic009G036000 Sobic001G320900--Sobic009G036000 Sobic001G320900--Sobic003G144700 Sobic001G320900--Sobic009G169000 Sobic001G320900--Sobic001G391500 Sobic001G320900--Sobic003G148600 Sobic009G036100 Sobic009G036100 Sobic001G320900--Sobic009G036100 Sobic001G320900--Sobic003G197200 Sobic001G320900--Sobic003G355100 Sobic001G405500 Sobic001G405500 Sobic001G320900--Sobic001G405500 Sobic002G395300 Sobic002G395300 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic004G169200--Sobic003G428700 Sobic006G263600 Sobic006G263600 Sobic004G169200--Sobic006G263600 Sobic004G191400 Sobic004G191400 Sobic004G169200--Sobic004G191400 Sobic009G122400 Sobic009G122400 Sobic004G169200--Sobic009G122400 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000
Octagon: transcription factors


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