Gene annotation
Transcriptome id Sobic.009G036000.1
Synonym Sb09g003050, RCI2A
Functional annotation similar to Hydrophobic protein LTI6B (PubMedID : 29862293)
OsRCI2-6 - Hydrophobic protein LTI6B, expressed
UniProt C5YZL5
Pfam PF01679
Panther DB PTHR21659 PTHR21659:SF24
NCBI CDD KOG1773; Stress responsive protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G05880 : Low temperature and salt responsive protein family
RAP-DB (Rice) LOC_Os05g04700.1 : OsRCI2-6 - Hydrophobic protein LTI6B, expressed
MaizeGDB (Corn) -
Brachypodium KQK15031
Barley HORVU2Hr1G027430.2 , HORVU2Hr1G027430.3 , HORVU2Hr1G027430.1
Wheat TraesCS2D02G157100 , TraesCS2B02G177100 , TraesCS2A02G152000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
3 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
4 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
5 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
6 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
7 Sobic.001G308300 expressed protein -
8 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
10 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
11 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
12 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G108200 expressed protein -
14 Sobic.003G369100 AP2 domain containing protein, expressed -
15 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
16 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
17 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
18 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
19 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
20 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase


Gene co-expression network
sample Sobic009G036000 Sobic009G036000 Sobic001G320900 Sobic001G320900 Sobic009G036000--Sobic001G320900 Sobic009G036100 Sobic009G036100 Sobic009G036000--Sobic009G036100 Sobic009G247900 Sobic009G247900 Sobic009G036000--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic009G036000--Sobic001G383700 Sobic003G364600 Sobic003G364600 Sobic009G036000--Sobic003G364600 Sobic007G074000 Sobic007G074000 Sobic009G036000--Sobic007G074000 Sobic001G308300 Sobic001G308300 Sobic009G036000--Sobic001G308300 Sobic001G391500 Sobic001G391500 Sobic009G036000--Sobic001G391500 Sobic004G169200 Sobic004G169200 Sobic009G036000--Sobic004G169200 Sobic001G320900--Sobic009G036000 Sobic003G144700 Sobic003G144700 Sobic001G320900--Sobic003G144700 Sobic009G169000 Sobic009G169000 Sobic001G320900--Sobic009G169000 Sobic001G320900--Sobic001G391500 Sobic003G148600 Sobic003G148600 Sobic001G320900--Sobic003G148600 Sobic001G320900--Sobic009G036100 Sobic003G197200 Sobic003G197200 Sobic001G320900--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic001G320900--Sobic003G355100 Sobic001G405500 Sobic001G405500 Sobic001G320900--Sobic001G405500 Sobic009G036100--Sobic009G036000 Sobic009G036100--Sobic007G074000 Sobic009G036100--Sobic001G320900 Sobic001G407800 Sobic001G407800 Sobic009G036100--Sobic001G407800 Sobic009G036100--Sobic009G247900 Sobic002G140300 Sobic002G140300 Sobic009G036100--Sobic002G140300 Sobic003G369100 Sobic003G369100 Sobic009G036100--Sobic003G369100 Sobic003G324400 Sobic003G324400 Sobic009G036100--Sobic003G324400 Sobic001G258300 Sobic001G258300 Sobic009G036100--Sobic001G258300 Sobic009G247900--Sobic007G074000 Sobic003G202200 Sobic003G202200 Sobic009G247900--Sobic003G202200 Sobic009G247900--Sobic001G383700 Sobic003G228900 Sobic003G228900 Sobic009G247900--Sobic003G228900 Sobic003G428700 Sobic003G428700 Sobic009G247900--Sobic003G428700 Sobic010G209200 Sobic010G209200 Sobic009G247900--Sobic010G209200 Sobic009G247900--Sobic009G036100 Sobic009G247900--Sobic009G036000 Sobic004G341800 Sobic004G341800 Sobic009G247900--Sobic004G341800 Sobic001G383700--Sobic003G202200 Sobic001G383700--Sobic009G247900 Sobic001G449700 Sobic001G449700 Sobic001G383700--Sobic001G449700 Sobic007G149300 Sobic007G149300 Sobic001G383700--Sobic007G149300 Sobic001G383700--Sobic009G036000 Sobic006G263600 Sobic006G263600 Sobic001G383700--Sobic006G263600 Sobic001G383700--Sobic004G169200 Sobic004G191400 Sobic004G191400 Sobic001G383700--Sobic004G191400 Sobic002G395300 Sobic002G395300 Sobic001G383700--Sobic002G395300 Sobic003G364600--Sobic007G074000 Sobic004G141200 Sobic004G141200 Sobic003G364600--Sobic004G141200 Sobic007G036900 Sobic007G036900 Sobic003G364600--Sobic007G036900 Sobic003G364600--Sobic003G369100 Sobic003G364600--Sobic001G308300 Sobic002G140400 Sobic002G140400 Sobic003G364600--Sobic002G140400 Sobic006G158600 Sobic006G158600 Sobic003G364600--Sobic006G158600 Sobic003G364600--Sobic001G391500 Sobic003G339500 Sobic003G339500 Sobic003G364600--Sobic003G339500 Sobic007G074000--Sobic003G369100 Sobic007G074000--Sobic004G141200 Sobic004G237800 Sobic004G237800 Sobic007G074000--Sobic004G237800 Sobic007G074000--Sobic002G140400 Sobic007G074000--Sobic003G228900 Sobic002G336600 Sobic002G336600 Sobic007G074000--Sobic002G336600 Sobic007G074000--Sobic003G364600 Sobic001G138600 Sobic001G138600 Sobic007G074000--Sobic001G138600 Sobic007G074000--Sobic009G247900 Sobic001G308300--Sobic002G140400 Sobic001G308300--Sobic003G369100 Sobic001G308300--Sobic004G141200 Sobic001G108200 Sobic001G108200 Sobic001G308300--Sobic001G108200 Sobic001G308300--Sobic007G074000 Sobic001G387900 Sobic001G387900 Sobic001G308300--Sobic001G387900 Sobic001G038900 Sobic001G038900 Sobic001G308300--Sobic001G038900 Sobic001G308300--Sobic003G364600 Sobic001G308300--Sobic006G158600 Sobic001G459800 Sobic001G459800 Sobic001G391500--Sobic001G459800 Sobic001G391500--Sobic004G141200 Sobic001G391500--Sobic003G144700 Sobic007G213800 Sobic007G213800 Sobic001G391500--Sobic007G213800 Sobic001G391500--Sobic001G320900 Sobic001G391500--Sobic003G148600 Sobic001G391500--Sobic003G369100 Sobic001G391500--Sobic001G138600 Sobic001G391500--Sobic007G074000 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic004G169200--Sobic003G428700 Sobic004G169200--Sobic006G263600 Sobic004G169200--Sobic004G191400 Sobic009G122400 Sobic009G122400 Sobic004G169200--Sobic009G122400 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000
Octagon: transcription factors


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