Gene annotation
Transcriptome id Sobic.003G202200.1,Sobic.003G202200.2
Synonym Sb03g026430
Functional annotation uncharacterized protein PA4923, putative, expressed
UniProt C5XPH7 , A0A1W0VY98
Pfam PF03641
Panther DB PTHR31223 PTHR31223:SF20
NCBI CDD -
KEGG Orthology K06966; pyrimidine/purine-5'-nucleotide nucleosidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53450 : Putative lysine decarboxylase family protein
RAP-DB (Rice) LOC_Os01g40630.1 : uncharacterized protein PA4923, putative, expressed
MaizeGDB (Corn) Zm00025a038425 , Zm00025a028533 , Zm00025a044761
Brachypodium KQK04588 , KQK08488
Barley HORVU3Hr1G050770.18 , HORVU3Hr1G050770.19 , HORVU3Hr1G050770.14 , HORVU3Hr1G050770.15 , HORVU3Hr1G050770.16 , HORVU3Hr1G050770.17 , HORVU3Hr1G050770.10 , HORVU3Hr1G050770.12 , HORVU3Hr1G050770.13 , HORVU3Hr1G050770.20 , HORVU1Hr1G094290.10 , HORVU1Hr1G094290.16 , HORVU1Hr1G094290.14 , HORVU1Hr1G094290.3 , HORVU1Hr1G094290.2 , HORVU1Hr1G094290.1 , HORVU1Hr1G094290.7 , HORVU1Hr1G094290.6 , HORVU1Hr1G094290.5 , HORVU1Hr1G094290.4 , HORVU1Hr1G094290.9 , HORVU3Hr1G050770.6 , HORVU3Hr1G050770.7 , HORVU3Hr1G050770.4 , HORVU3Hr1G050770.5 , HORVU3Hr1G050770.2 , HORVU3Hr1G050770.3 , HORVU3Hr1G050770.1 , HORVU3Hr1G050770.8 , HORVU3Hr1G050770.9
Wheat TraesCS1D02G444500 , TraesCS1B02G471300 , TraesCS3D02G213900 , TraesCS3B02G241600 , TraesCS3A02G211100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G481100 DUF581 domain containing protein, expressed -
2 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
3 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
4 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
5 Sobic.003G021500 sodium/calcium exchanger protein, putative, expressed -
6 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
7 Sobic.004G191400 - -
8 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
9 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
10 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
11 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
12 Sobic.002G405600 early response to dehydration 15, putative, expressed -
13 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
14 Sobic.003G110200 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
15 Sobic.007G149300 expressed protein -
16 Sobic.010G267600 similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed -
17 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.009G122400 expressed protein -
19 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
20 Sobic.003G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G202200 Sobic003G202200 Sobic001G481100 Sobic001G481100 Sobic003G202200--Sobic001G481100 Sobic009G247900 Sobic009G247900 Sobic003G202200--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic003G202200--Sobic001G383700 Sobic001G449700 Sobic001G449700 Sobic003G202200--Sobic001G449700 Sobic003G021500 Sobic003G021500 Sobic003G202200--Sobic003G021500 Sobic003G228900 Sobic003G228900 Sobic003G202200--Sobic003G228900 Sobic004G191400 Sobic004G191400 Sobic003G202200--Sobic004G191400 Sobic003G364600 Sobic003G364600 Sobic003G202200--Sobic003G364600 Sobic009G036000 Sobic009G036000 Sobic003G202200--Sobic009G036000 Sobic001G481100--Sobic003G228900 Sobic006G075400 Sobic006G075400 Sobic001G481100--Sobic006G075400 Sobic001G318700 Sobic001G318700 Sobic001G481100--Sobic001G318700 Sobic007G074000 Sobic007G074000 Sobic001G481100--Sobic007G074000 Sobic001G256700 Sobic001G256700 Sobic001G481100--Sobic001G256700 Sobic001G481100--Sobic003G202200 Sobic001G079300 Sobic001G079300 Sobic001G481100--Sobic001G079300 Sobic004G301000 Sobic004G301000 Sobic001G481100--Sobic004G301000 Sobic002G251000 Sobic002G251000 Sobic001G481100--Sobic002G251000 Sobic009G247900--Sobic007G074000 Sobic009G247900--Sobic003G202200 Sobic009G247900--Sobic001G383700 Sobic009G247900--Sobic003G228900 Sobic003G428700 Sobic003G428700 Sobic009G247900--Sobic003G428700 Sobic010G209200 Sobic010G209200 Sobic009G247900--Sobic010G209200 Sobic009G036100 Sobic009G036100 Sobic009G247900--Sobic009G036100 Sobic009G247900--Sobic009G036000 Sobic004G341800 Sobic004G341800 Sobic009G247900--Sobic004G341800 Sobic001G383700--Sobic003G202200 Sobic001G383700--Sobic009G247900 Sobic001G383700--Sobic001G449700 Sobic007G149300 Sobic007G149300 Sobic001G383700--Sobic007G149300 Sobic001G383700--Sobic009G036000 Sobic006G263600 Sobic006G263600 Sobic001G383700--Sobic006G263600 Sobic004G169200 Sobic004G169200 Sobic001G383700--Sobic004G169200 Sobic001G383700--Sobic004G191400 Sobic002G395300 Sobic002G395300 Sobic001G383700--Sobic002G395300 Sobic001G449700--Sobic001G383700 Sobic001G449700--Sobic003G202200 Sobic003G110200 Sobic003G110200 Sobic001G449700--Sobic003G110200 Sobic001G449700--Sobic007G149300 Sobic001G449700--Sobic003G021500 Sobic001G449700--Sobic009G036000 Sobic002G333400 Sobic002G333400 Sobic001G449700--Sobic002G333400 Sobic001G259700 Sobic001G259700 Sobic001G449700--Sobic001G259700 Sobic005G186100 Sobic005G186100 Sobic001G449700--Sobic005G186100 Sobic003G021500--Sobic003G364600 Sobic003G021500--Sobic003G202200 Sobic003G021500--Sobic001G449700 Sobic003G021500--Sobic009G036000 Sobic003G320800 Sobic003G320800 Sobic003G021500--Sobic003G320800 Sobic003G021500--Sobic001G383700 Sobic002G034500 Sobic002G034500 Sobic003G021500--Sobic002G034500 Sobic002G082600 Sobic002G082600 Sobic003G021500--Sobic002G082600 Sobic002G312400 Sobic002G312400 Sobic003G021500--Sobic002G312400 Sobic003G228900--Sobic006G075400 Sobic003G228900--Sobic010G209200 Sobic009G184000 Sobic009G184000 Sobic003G228900--Sobic009G184000 Sobic003G228900--Sobic004G191400 Sobic003G432700 Sobic003G432700 Sobic003G228900--Sobic003G432700 Sobic003G260300 Sobic003G260300 Sobic003G228900--Sobic003G260300 Sobic007G017500 Sobic007G017500 Sobic003G228900--Sobic007G017500 Sobic009G122400 Sobic009G122400 Sobic003G228900--Sobic009G122400 Sobic003G228900--Sobic001G079300 Sobic004G191300 Sobic004G191300 Sobic004G191400--Sobic004G191300 Sobic004G191400--Sobic001G079300 Sobic004G191400--Sobic009G122400 Sobic004G191400--Sobic010G209200 Sobic007G122800 Sobic007G122800 Sobic004G191400--Sobic007G122800 Sobic004G191400--Sobic003G228900 Sobic004G308900 Sobic004G308900 Sobic004G191400--Sobic004G308900 Sobic004G191400--Sobic003G428700 Sobic004G294400 Sobic004G294400 Sobic004G191400--Sobic004G294400 Sobic003G364600--Sobic007G074000 Sobic004G141200 Sobic004G141200 Sobic003G364600--Sobic004G141200 Sobic007G036900 Sobic007G036900 Sobic003G364600--Sobic007G036900 Sobic003G369100 Sobic003G369100 Sobic003G364600--Sobic003G369100 Sobic001G308300 Sobic001G308300 Sobic003G364600--Sobic001G308300 Sobic002G140400 Sobic002G140400 Sobic003G364600--Sobic002G140400 Sobic006G158600 Sobic006G158600 Sobic003G364600--Sobic006G158600 Sobic001G391500 Sobic001G391500 Sobic003G364600--Sobic001G391500 Sobic003G339500 Sobic003G339500 Sobic003G364600--Sobic003G339500 Sobic001G320900 Sobic001G320900 Sobic009G036000--Sobic001G320900 Sobic009G036000--Sobic009G036100 Sobic009G036000--Sobic009G247900 Sobic009G036000--Sobic001G383700 Sobic009G036000--Sobic003G364600 Sobic009G036000--Sobic007G074000 Sobic009G036000--Sobic001G308300 Sobic009G036000--Sobic001G391500 Sobic009G036000--Sobic004G169200
Octagon: transcription factors


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