Gene annotation
| Transcriptome id | Sobic.010G267600.1 |
|---|---|
| Synonym | Sb10g030260 |
| Functional annotation | similar to Putative senescence-associated protein (PubMedID : 29862293) senescence-associated protein, putative, expressed |
| UniProt | C5Z1W6 |
| Pfam | PF06911 |
| Panther DB | PTHR21068 PTHR21068:SF22 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G51250 : Senescence/dehydration-associated protein-related |
|---|---|
| RAP-DB (Rice) | LOC_Os06g50330.1 : senescence-associated protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a018498 |
| Brachypodium | KQK16711 |
| Barley | HORVU6Hr1G028770.2 , HORVU6Hr1G028770.1 , HORVU1Hr1G023280.2 , HORVU1Hr1G023280.1 , HORVU7Hr1G052660.1 , HORVU1Hr1G023190.2 , HORVU1Hr1G023190.1 |
| Wheat | TraesCS7A02G533000 , TraesCS5A02G257200 |
| Populus | - |
JBrowse
| Sobic.010G267600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G202200 | uncharacterized protein PA4923, putative, expressed | K06966: pyrimidine/purine-5'-nucleotide nucleosidase |
| 2 | Sobic.003G092900 | expressed protein | - |
| 3 | Sobic.007G149300 | expressed protein | - |
| 4 | Sobic.002G405600 | early response to dehydration 15, putative, expressed | - |
| 5 | Sobic.001G383700 | OsCML27 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 6 | Sobic.009G247900 | similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed | - |
| 7 | Sobic.001G449700 | highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 8 | Sobic.010G204600 | SNF7 domain containing protein, putative, expressed | K12197: CHMP1, VPS46, charged multivesicular body protein 1 |
| 9 | Sobic.001G259700 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 10 | Sobic.001G095300 | prenylated rab acceptor, putative, expressed | - |
| 11 | Sobic.003G082600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCML16 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 12 | Sobic.003G324400 | Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed | - |
| 13 | Sobic.009G192600 | Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed | K01592: tyrosine decarboxylase |
| 14 | Sobic.003G021500 | sodium/calcium exchanger protein, putative, expressed | - |
| 15 | Sobic.006G263600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.003G093000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 17 | Sobic.001G259600 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 18 | Sobic.005G109000 | cytochrome P450, putative, expressed | - |
| 19 | Sobic.009G036000 | similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed | - |
| 20 | Sobic.005G028700 | peflin, putative, expressed | K13448: calcium-binding protein CML |
Gene co-expression network
Octagon: transcription factors
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