Gene annotation
Transcriptome id Sobic.010G204600.1
Synonym CHMP1A, Sb10g025200, VPS46.2
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5Z6N7
Pfam PF03357
Panther DB PTHR10476 PTHR10476:SF11
NCBI CDD KOG3232; Vacuolar assembly/sorting protein DID2
KEGG Orthology K12197; CHMP1, VPS46, charged multivesicular body protein 1
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT1G17730 : vacuolar protein sorting 46.1
RAP-DB (Rice) LOC_Os06g43590.3 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a051408
Brachypodium KQK16758
Barley HORVU5Hr1G034180.11 , HORVU5Hr1G034180.10 , HORVU5Hr1G034180.13 , HORVU5Hr1G034180.12 , HORVU5Hr1G034180.14 , HORVU5Hr1G034180.9 , HORVU5Hr1G034180.8 , HORVU5Hr1G034180.5 , HORVU5Hr1G034180.4 , HORVU5Hr1G034180.7 , HORVU5Hr1G034180.6 , HORVU5Hr1G034180.1 , HORVU5Hr1G034180.3 , HORVU5Hr1G034180.2 , HORVU7Hr1G115800.1 , HORVU7Hr1G115800.2 , HORVU7Hr1G115800.3 , HORVU7Hr1G115800.4
Wheat TraesCS4A02G344000
Populus -


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cDNA sequences
Sobic.010G204600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
2 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
3 Sobic.002G405600 early response to dehydration 15, putative, expressed -
4 Sobic.004G157000 protein kinase domain containing protein, expressed K13430: serine/threonine-protein kinase PBS1
5 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
6 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
7 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
8 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
9 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
10 Sobic.001G536500 expressed protein -
11 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
12 Sobic.001G422900 zinc finger family protein, putative, expressed -
13 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
14 Sobic.002G245800 AN1-like zinc finger domain containing protein, expressed -
15 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
16 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
17 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
18 Sobic.005G028700 peflin, putative, expressed K13448: calcium-binding protein CML
19 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
20 Sobic.010G267600 similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed -


Gene co-expression network
sample Sobic010G204600 Sobic010G204600 Sobic001G095300 Sobic001G095300 Sobic010G204600--Sobic001G095300 Sobic003G063200 Sobic003G063200 Sobic010G204600--Sobic003G063200 Sobic002G405600 Sobic002G405600 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic009G023200 Sobic009G023200 Sobic010G204600--Sobic009G023200 Sobic009G129000 Sobic009G129000 Sobic010G204600--Sobic009G129000 Sobic001G055600 Sobic001G055600 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic009G033700 Sobic009G033700 Sobic010G204600--Sobic009G033700 Sobic001G095300--Sobic010G204600 Sobic002G140300 Sobic002G140300 Sobic001G095300--Sobic002G140300 Sobic003G092900 Sobic003G092900 Sobic001G095300--Sobic003G092900 Sobic003G324400 Sobic003G324400 Sobic001G095300--Sobic003G324400 Sobic001G095300--Sobic002G405600 Sobic001G538866 Sobic001G538866 Sobic001G095300--Sobic001G538866 Sobic002G245800 Sobic002G245800 Sobic001G095300--Sobic002G245800 Sobic001G095300--Sobic009G129000 Sobic006G179500 Sobic006G179500 Sobic001G095300--Sobic006G179500 Sobic005G028700 Sobic005G028700 Sobic003G063200--Sobic005G028700 Sobic003G063200--Sobic010G204600 Sobic004G247200 Sobic004G247200 Sobic003G063200--Sobic004G247200 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic004G306300 Sobic004G306300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic002G405600--Sobic002G245800 Sobic002G405600--Sobic003G324400 Sobic002G405600--Sobic003G202200 Sobic002G405600--Sobic010G204600 Sobic009G247900 Sobic009G247900 Sobic002G405600--Sobic009G247900 Sobic010G267600 Sobic010G267600 Sobic002G405600--Sobic010G267600 Sobic006G263600 Sobic006G263600 Sobic002G405600--Sobic006G263600 Sobic001G259700 Sobic001G259700 Sobic002G405600--Sobic001G259700 Sobic002G405600--Sobic001G095300 Sobic004G157000--Sobic010G204600 Sobic009G046600 Sobic009G046600 Sobic004G157000--Sobic009G046600 Sobic003G249800 Sobic003G249800 Sobic004G157000--Sobic003G249800 Sobic002G046100 Sobic002G046100 Sobic004G157000--Sobic002G046100 Sobic004G157000--Sobic009G129000 Sobic004G157000--Sobic009G023200 Sobic004G157000--Sobic009G033700 Sobic002G345300 Sobic002G345300 Sobic004G157000--Sobic002G345300 Sobic003G285800 Sobic003G285800 Sobic004G157000--Sobic003G285800 Sobic004G187900 Sobic004G187900 Sobic009G023200--Sobic004G187900 Sobic009G023200--Sobic010G204600 Sobic009G023200--Sobic003G063200 Sobic001G067601 Sobic001G067601 Sobic009G023200--Sobic001G067601 Sobic009G023200--Sobic002G046100 Sobic009G023200--Sobic002G245800 Sobic003G181500 Sobic003G181500 Sobic009G023200--Sobic003G181500 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic010G086200 Sobic010G086200 Sobic009G129000--Sobic010G086200 Sobic009G129000--Sobic005G028700 Sobic009G183300 Sobic009G183300 Sobic009G129000--Sobic009G183300 Sobic009G129000--Sobic009G033700 Sobic009G200700 Sobic009G200700 Sobic009G129000--Sobic009G200700 Sobic004G065500 Sobic004G065500 Sobic009G129000--Sobic004G065500 Sobic010G217800 Sobic010G217800 Sobic009G129000--Sobic010G217800 Sobic006G267200 Sobic006G267200 Sobic009G129000--Sobic006G267200 Sobic009G129000--Sobic010G204600 Sobic001G055600--Sobic001G390300 Sobic007G074000 Sobic007G074000 Sobic001G055600--Sobic007G074000 Sobic001G055600--Sobic002G407900 Sobic009G159400 Sobic009G159400 Sobic001G055600--Sobic009G159400 Sobic001G481100 Sobic001G481100 Sobic001G055600--Sobic001G481100 Sobic001G055600--Sobic004G065500 Sobic002G336600 Sobic002G336600 Sobic001G055600--Sobic002G336600 Sobic003G228900 Sobic003G228900 Sobic001G055600--Sobic003G228900 Sobic001G055600--Sobic009G247900 Sobic003G202200--Sobic001G481100 Sobic003G202200--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic003G202200--Sobic001G383700 Sobic001G449700 Sobic001G449700 Sobic003G202200--Sobic001G449700 Sobic003G021500 Sobic003G021500 Sobic003G202200--Sobic003G021500 Sobic003G202200--Sobic003G228900 Sobic004G191400 Sobic004G191400 Sobic003G202200--Sobic004G191400 Sobic003G364600 Sobic003G364600 Sobic003G202200--Sobic003G364600 Sobic009G036000 Sobic009G036000 Sobic003G202200--Sobic009G036000 Sobic009G033700--Sobic010G086200 Sobic003G037800 Sobic003G037800 Sobic009G033700--Sobic003G037800 Sobic001G281400 Sobic001G281400 Sobic009G033700--Sobic001G281400 Sobic009G033700--Sobic003G249800 Sobic007G198100 Sobic007G198100 Sobic009G033700--Sobic007G198100 Sobic009G033700--Sobic009G129000 Sobic002G245100 Sobic002G245100 Sobic009G033700--Sobic002G245100 Sobic009G143400 Sobic009G143400 Sobic009G033700--Sobic009G143400 Sobic009G033700--Sobic004G065500
Octagon: transcription factors


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