Gene annotation
Transcriptome id Sobic.002G245800.3,Sobic.002G245800.4,Sobic.002G245800.5,Sobic.002G245800.2
Synonym Sb02g028240
Functional annotation AN1-like zinc finger domain containing protein, expressed
UniProt C5X3V8
Pfam PF01754 PF01428 PF01428 PF01754
Panther DB PTHR10634 PTHR10634:SF22 PTHR10634:SF22 PTHR10634
NCBI CDD KOG3173; Predicted Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0003677DNA binding GO:0003677DNA binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G12630 : A20/AN1-like zinc finger family protein
RAP-DB (Rice) LOC_Os09g31200.1 : AN1-like zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014199 , Zm00025a047436
Brachypodium -
Barley HORVU7Hr1G050270.3 , HORVU7Hr1G050270.2 , HORVU7Hr1G050270.1 , HORVU7Hr1G050270.4 , HORVU5Hr1G072920.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G245800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G405600 early response to dehydration 15, putative, expressed -
2 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
3 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
4 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
5 Sobic.001G422900 zinc finger family protein, putative, expressed -
6 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
7 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
8 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
10 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
11 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
12 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
13 Sobic.002G354900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed -
14 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
15 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
16 Sobic.010G209100 WRKY28, expressed -
17 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
18 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.007G123300 C1-like domain containing protein, expressed -
20 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -


Gene co-expression network
sample Sobic002G245800 Sobic002G245800 Sobic002G405600 Sobic002G405600 Sobic002G245800--Sobic002G405600 Sobic001G040200 Sobic001G040200 Sobic002G245800--Sobic001G040200 Sobic003G324400 Sobic003G324400 Sobic002G245800--Sobic003G324400 Sobic009G247900 Sobic009G247900 Sobic002G245800--Sobic009G247900 Sobic001G422900 Sobic001G422900 Sobic002G245800--Sobic001G422900 Sobic009G023200 Sobic009G023200 Sobic002G245800--Sobic009G023200 Sobic001G095300 Sobic001G095300 Sobic002G245800--Sobic001G095300 Sobic002G140300 Sobic002G140300 Sobic002G245800--Sobic002G140300 Sobic006G179500 Sobic006G179500 Sobic002G245800--Sobic006G179500 Sobic002G405600--Sobic002G245800 Sobic002G405600--Sobic003G324400 Sobic003G202200 Sobic003G202200 Sobic002G405600--Sobic003G202200 Sobic010G204600 Sobic010G204600 Sobic002G405600--Sobic010G204600 Sobic002G405600--Sobic009G247900 Sobic010G267600 Sobic010G267600 Sobic002G405600--Sobic010G267600 Sobic006G263600 Sobic006G263600 Sobic002G405600--Sobic006G263600 Sobic001G259700 Sobic001G259700 Sobic002G405600--Sobic001G259700 Sobic002G405600--Sobic001G095300 Sobic001G040200--Sobic002G140300 Sobic002G359300 Sobic002G359300 Sobic001G040200--Sobic002G359300 Sobic001G040200--Sobic003G324400 Sobic003G430400 Sobic003G430400 Sobic001G040200--Sobic003G430400 Sobic001G538866 Sobic001G538866 Sobic001G040200--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic001G040200--Sobic009G036100 Sobic003G158500 Sobic003G158500 Sobic001G040200--Sobic003G158500 Sobic001G040200--Sobic006G179500 Sobic001G040200--Sobic002G245800 Sobic006G165100 Sobic006G165100 Sobic003G324400--Sobic006G165100 Sobic003G324400--Sobic001G040200 Sobic003G324400--Sobic002G140300 Sobic003G324400--Sobic009G036100 Sobic003G324400--Sobic006G263600 Sobic003G324400--Sobic009G247900 Sobic003G324400--Sobic002G405600 Sobic003G313800 Sobic003G313800 Sobic003G324400--Sobic003G313800 Sobic002G282300 Sobic002G282300 Sobic003G324400--Sobic002G282300 Sobic007G074000 Sobic007G074000 Sobic009G247900--Sobic007G074000 Sobic009G247900--Sobic003G202200 Sobic001G383700 Sobic001G383700 Sobic009G247900--Sobic001G383700 Sobic003G228900 Sobic003G228900 Sobic009G247900--Sobic003G228900 Sobic003G428700 Sobic003G428700 Sobic009G247900--Sobic003G428700 Sobic010G209200 Sobic010G209200 Sobic009G247900--Sobic010G209200 Sobic009G247900--Sobic009G036100 Sobic009G036000 Sobic009G036000 Sobic009G247900--Sobic009G036000 Sobic004G341800 Sobic004G341800 Sobic009G247900--Sobic004G341800 Sobic001G422900--Sobic002G245800 Sobic001G422900--Sobic010G204600 Sobic001G037000 Sobic001G037000 Sobic001G422900--Sobic001G037000 Sobic001G422900--Sobic001G095300 Sobic003G181500 Sobic003G181500 Sobic001G422900--Sobic003G181500 Sobic003G249800 Sobic003G249800 Sobic001G422900--Sobic003G249800 Sobic005G229700 Sobic005G229700 Sobic001G422900--Sobic005G229700 Sobic002G211900 Sobic002G211900 Sobic001G422900--Sobic002G211900 Sobic001G422900--Sobic002G405600 Sobic004G187900 Sobic004G187900 Sobic009G023200--Sobic004G187900 Sobic009G023200--Sobic010G204600 Sobic003G063200 Sobic003G063200 Sobic009G023200--Sobic003G063200 Sobic001G067601 Sobic001G067601 Sobic009G023200--Sobic001G067601 Sobic002G046100 Sobic002G046100 Sobic009G023200--Sobic002G046100 Sobic009G023200--Sobic002G245800 Sobic009G023200--Sobic003G181500 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic001G095300--Sobic010G204600 Sobic001G095300--Sobic002G140300 Sobic003G092900 Sobic003G092900 Sobic001G095300--Sobic003G092900 Sobic001G095300--Sobic003G324400 Sobic001G095300--Sobic002G405600 Sobic001G095300--Sobic001G538866 Sobic001G095300--Sobic002G245800 Sobic009G129000 Sobic009G129000 Sobic001G095300--Sobic009G129000 Sobic001G095300--Sobic006G179500 Sobic002G140300--Sobic006G179500 Sobic002G140300--Sobic001G040200 Sobic002G140300--Sobic006G165100 Sobic004G222500 Sobic004G222500 Sobic002G140300--Sobic004G222500 Sobic002G140300--Sobic001G538866 Sobic002G140300--Sobic009G036100 Sobic006G183400 Sobic006G183400 Sobic002G140300--Sobic006G183400 Sobic002G140300--Sobic003G324400 Sobic002G140300--Sobic009G247900 Sobic006G179500--Sobic002G140300 Sobic006G179500--Sobic002G359300 Sobic006G179500--Sobic006G183400 Sobic006G179500--Sobic001G040200 Sobic006G179500--Sobic004G222500 Sobic003G300800 Sobic003G300800 Sobic006G179500--Sobic003G300800 Sobic006G179500--Sobic003G430400 Sobic006G179500--Sobic006G165100 Sobic006G089300 Sobic006G089300 Sobic006G179500--Sobic006G089300
Octagon: transcription factors


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