Gene annotation
Transcriptome id Sobic.006G179500.1,Sobic.006G179500.2,Sobic.006G179500.3
Synonym
Functional annotation protein kinase APK1B, chloroplast precursor, putative, expressed
UniProt A0A1B6PMM3 , A0A1B6PMK6 , A0A1Z5RFK0
Pfam PF00069 PF07714
Panther DB PTHR27001 PTHR27001:SF160 PTHR27001 PTHR27001:SF13
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G17220 : Protein kinase superfamily protein,protein kinase 1B
RAP-DB (Rice) LOC_Os04g47620.1 : protein kinase APK1B, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a056803 , Zm00025a018394 , Zm00025a018543 , Zm00025a041769 , Zm00025a018728 , Zm00025a000434 , Zm00025a000914 , Zm00025a032271 , Zm00025a053364 , Zm00025a035043 , Zm00025a002811
Brachypodium PNT61665 , PNT61664 , KQK23815 , KQK00688 , KQK07880 , KQJ84062 , KQJ84063 , PNT69199
Barley HORVU7Hr1G121690.11 , HORVU7Hr1G121690.12 , HORVU2Hr1G095970.9 , HORVU2Hr1G095970.2 , HORVU2Hr1G095970.3 , HORVU2Hr1G095970.1 , HORVU2Hr1G095970.4 , HORVU6Hr1G064690.7 , HORVU6Hr1G064690.6 , HORVU6Hr1G064690.5 , HORVU6Hr1G064690.4 , HORVU6Hr1G064690.3 , HORVU6Hr1G064690.2 , HORVU6Hr1G064690.9 , HORVU6Hr1G064690.8 , HORVU2Hr1G095950.1 , HORVU2Hr1G095950.2 , HORVU6Hr1G064690.15 , HORVU6Hr1G064690.14 , HORVU6Hr1G064690.13 , HORVU6Hr1G064690.12 , HORVU6Hr1G064690.11 , HORVU6Hr1G064690.10 , HORVU7Hr1G121690.6 , HORVU7Hr1G121690.5 , HORVU7Hr1G121690.3 , HORVU7Hr1G121690.1 , HORVU0Hr1G039910.2 , HORVU2Hr1G095970.10 , HORVU2Hr1G095970.12 , HORVU2Hr1G095970.13
Wheat TraesCS6D02G235300 , TraesCSU02G105900 , TraesCS2B02G422500 , TraesCS2B02G422500 , TraesCS6B02G271700 , TraesCS4D02G293200 , TraesCS4D02G322300 , TraesCS4D02G322300 , TraesCS6A02G253700 , TraesCS2D02G038200 , TraesCS5A02G497700 , TraesCS2A02G404600 , TraesCS2D02G401500 , TraesCS2D02G401500 , TraesCS2D02G401500 , TraesCS4B02G294300 , TraesCS2B02G052500 , TraesCS2A02G039600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
3 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
4 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
5 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
6 Sobic.003G300800 GA inactivating enzyme(PubMedID : 24151305)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-regulation in phyB-1 mutant(PubMedID : 26893475)@Expressed in older stem(PubMedID : 28649278)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
7 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
8 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
9 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
10 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
11 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
12 Sobic.001G538866 - -
13 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
14 Sobic.007G107850 - -
15 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
16 Sobic.002G245800 AN1-like zinc finger domain containing protein, expressed -
17 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
18 Sobic.006G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
19 Sobic.004G286600 Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed -
20 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -


Gene co-expression network
sample Sobic006G179500 Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic006G179500--Sobic002G140300 Sobic002G359300 Sobic002G359300 Sobic006G179500--Sobic002G359300 Sobic006G183400 Sobic006G183400 Sobic006G179500--Sobic006G183400 Sobic001G040200 Sobic001G040200 Sobic006G179500--Sobic001G040200 Sobic004G222500 Sobic004G222500 Sobic006G179500--Sobic004G222500 Sobic003G300800 Sobic003G300800 Sobic006G179500--Sobic003G300800 Sobic003G430400 Sobic003G430400 Sobic006G179500--Sobic003G430400 Sobic006G165100 Sobic006G165100 Sobic006G179500--Sobic006G165100 Sobic006G089300 Sobic006G089300 Sobic006G179500--Sobic006G089300 Sobic002G140300--Sobic006G179500 Sobic002G140300--Sobic001G040200 Sobic002G140300--Sobic006G165100 Sobic002G140300--Sobic004G222500 Sobic001G538866 Sobic001G538866 Sobic002G140300--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic002G140300--Sobic009G036100 Sobic002G140300--Sobic006G183400 Sobic003G324400 Sobic003G324400 Sobic002G140300--Sobic003G324400 Sobic009G247900 Sobic009G247900 Sobic002G140300--Sobic009G247900 Sobic002G359300--Sobic001G040200 Sobic002G359300--Sobic006G179500 Sobic002G359300--Sobic002G140300 Sobic002G359300--Sobic006G183400 Sobic002G195900 Sobic002G195900 Sobic002G359300--Sobic002G195900 Sobic002G359300--Sobic003G430400 Sobic003G264500 Sobic003G264500 Sobic002G359300--Sobic003G264500 Sobic002G359300--Sobic006G089300 Sobic009G183300 Sobic009G183300 Sobic002G359300--Sobic009G183300 Sobic006G183400--Sobic006G179500 Sobic006G183400--Sobic002G140300 Sobic005G196800 Sobic005G196800 Sobic006G183400--Sobic005G196800 Sobic001G247300 Sobic001G247300 Sobic006G183400--Sobic001G247300 Sobic006G183400--Sobic004G222500 Sobic003G037800 Sobic003G037800 Sobic006G183400--Sobic003G037800 Sobic006G183400--Sobic009G247900 Sobic006G183400--Sobic002G359300 Sobic006G183400--Sobic003G264500 Sobic001G040200--Sobic002G140300 Sobic001G040200--Sobic002G359300 Sobic001G040200--Sobic003G324400 Sobic001G040200--Sobic003G430400 Sobic001G040200--Sobic001G538866 Sobic001G040200--Sobic009G036100 Sobic003G158500 Sobic003G158500 Sobic001G040200--Sobic003G158500 Sobic001G040200--Sobic006G179500 Sobic002G245800 Sobic002G245800 Sobic001G040200--Sobic002G245800 Sobic004G222500--Sobic002G140300 Sobic003G093000 Sobic003G093000 Sobic004G222500--Sobic003G093000 Sobic003G092900 Sobic003G092900 Sobic004G222500--Sobic003G092900 Sobic003G428700 Sobic003G428700 Sobic004G222500--Sobic003G428700 Sobic004G222500--Sobic006G183400 Sobic004G222500--Sobic009G247900 Sobic001G035100 Sobic001G035100 Sobic004G222500--Sobic001G035100 Sobic002G220000 Sobic002G220000 Sobic004G222500--Sobic002G220000 Sobic004G222500--Sobic006G179500 Sobic003G300800--Sobic006G179500 Sobic003G300800--Sobic002G140300 Sobic003G300800--Sobic002G359300 Sobic003G300800--Sobic006G183400 Sobic003G300800--Sobic009G036100 Sobic008G177800 Sobic008G177800 Sobic003G300800--Sobic008G177800 Sobic003G300800--Sobic001G040200 Sobic010G178500 Sobic010G178500 Sobic003G300800--Sobic010G178500 Sobic002G294700 Sobic002G294700 Sobic003G300800--Sobic002G294700 Sobic002G263400 Sobic002G263400 Sobic003G430400--Sobic002G263400 Sobic002G140400 Sobic002G140400 Sobic003G430400--Sobic002G140400 Sobic003G430400--Sobic001G040200 Sobic006G066200 Sobic006G066200 Sobic003G430400--Sobic006G066200 Sobic003G430400--Sobic002G140300 Sobic007G074000 Sobic007G074000 Sobic003G430400--Sobic007G074000 Sobic003G430400--Sobic003G092900 Sobic002G356101 Sobic002G356101 Sobic003G430400--Sobic002G356101 Sobic003G430400--Sobic004G222500 Sobic006G165100--Sobic002G140300 Sobic006G165100--Sobic003G324400 Sobic001G077400 Sobic001G077400 Sobic006G165100--Sobic001G077400 Sobic001G052300 Sobic001G052300 Sobic006G165100--Sobic001G052300 Sobic002G036100 Sobic002G036100 Sobic006G165100--Sobic002G036100 Sobic006G165100--Sobic009G036100 Sobic009G255500 Sobic009G255500 Sobic006G165100--Sobic009G255500 Sobic004G280900 Sobic004G280900 Sobic006G165100--Sobic004G280900 Sobic009G200700 Sobic009G200700 Sobic006G165100--Sobic009G200700 Sobic006G089300--Sobic001G040200 Sobic006G089300--Sobic002G359300 Sobic006G089300--Sobic006G179500 Sobic006G228300 Sobic006G228300 Sobic006G089300--Sobic006G228300 Sobic006G089300--Sobic001G538866 Sobic006G089300--Sobic002G140300 Sobic010G200700 Sobic010G200700 Sobic006G089300--Sobic010G200700 Sobic006G089300--Sobic002G036100 Sobic007G151100 Sobic007G151100 Sobic006G089300--Sobic007G151100
Octagon: transcription factors


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