Gene annotation
Transcriptome id Sobic.002G294700.1
Synonym SbTri23, Sb02g032600
Functional annotation Trihelix Family (PubMedID : 24864043)
transcription factor like protein, putative, expressed
UniProt A0A1B6QE22
Pfam PF13837
Panther DB PTHR31307 PTHR31307:SF7
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54390 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os09g38570.1 : transcription factor like protein, putative, expressed
MaizeGDB (Corn) Zm00025a047900 , Zm00025a014554 , Zm00025a014553
Brachypodium KQJ91442
Barley HORVU5Hr1G088770.11 , HORVU5Hr1G088770.10 , HORVU5Hr1G088770.12 , HORVU5Hr1G088770.9 , HORVU5Hr1G088770.8 , HORVU5Hr1G088770.1 , HORVU5Hr1G088770.3 , HORVU5Hr1G088770.2 , HORVU5Hr1G088770.5 , HORVU5Hr1G088770.4 , HORVU5Hr1G088770.7 , HORVU5Hr1G088770.6
Wheat TraesCS5A02G360100 , TraesCS5B02G362600 , TraesCS5D02G369500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
2 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
3 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
4 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
5 Sobic.004G286600 Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed -
6 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.010G246000 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.004G036600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed -
9 Sobic.002G278500 nodulin, putative, expressed -
10 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
11 Sobic.002G248100 expressed protein -
12 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
14 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
15 Sobic.002G354900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed -
16 Sobic.009G255500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
17 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
18 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
19 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
20 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G294700 Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic002G294700--Sobic008G177800 Sobic010G234600 Sobic010G234600 Sobic002G294700--Sobic010G234600 Sobic006G231100 Sobic006G231100 Sobic002G294700--Sobic006G231100 Sobic002G374100 Sobic002G374100 Sobic002G294700--Sobic002G374100 Sobic004G286600 Sobic004G286600 Sobic002G294700--Sobic004G286600 Sobic001G077700 Sobic001G077700 Sobic002G294700--Sobic001G077700 Sobic010G246000 Sobic010G246000 Sobic002G294700--Sobic010G246000 Sobic004G036600 Sobic004G036600 Sobic002G294700--Sobic004G036600 Sobic002G278500 Sobic002G278500 Sobic002G294700--Sobic002G278500 Sobic008G177800--Sobic002G294700 Sobic008G177800--Sobic006G231100 Sobic008G177800--Sobic010G234600 Sobic008G177800--Sobic004G286600 Sobic002G415600 Sobic002G415600 Sobic008G177800--Sobic002G415600 Sobic010G217800 Sobic010G217800 Sobic008G177800--Sobic010G217800 Sobic009G255500 Sobic009G255500 Sobic008G177800--Sobic009G255500 Sobic006G230900 Sobic006G230900 Sobic008G177800--Sobic006G230900 Sobic008G177800--Sobic001G077700 Sobic010G234700 Sobic010G234700 Sobic010G234600--Sobic010G234700 Sobic010G234600--Sobic008G177800 Sobic010G234600--Sobic001G077700 Sobic010G234600--Sobic006G231100 Sobic010G234600--Sobic002G294700 Sobic010G234600--Sobic002G415600 Sobic006G231332 Sobic006G231332 Sobic010G234600--Sobic006G231332 Sobic009G071800 Sobic009G071800 Sobic010G234600--Sobic009G071800 Sobic002G248100 Sobic002G248100 Sobic010G234600--Sobic002G248100 Sobic006G231100--Sobic008G177800 Sobic006G231100--Sobic006G230900 Sobic006G231200 Sobic006G231200 Sobic006G231100--Sobic006G231200 Sobic006G231100--Sobic010G217800 Sobic006G231100--Sobic002G415600 Sobic006G231100--Sobic010G234600 Sobic006G231100--Sobic004G286600 Sobic006G231100--Sobic002G294700 Sobic002G282300 Sobic002G282300 Sobic006G231100--Sobic002G282300 Sobic002G374100--Sobic002G294700 Sobic002G374100--Sobic010G246000 Sobic001G516600 Sobic001G516600 Sobic002G374100--Sobic001G516600 Sobic002G354900 Sobic002G354900 Sobic002G374100--Sobic002G354900 Sobic010G228000 Sobic010G228000 Sobic002G374100--Sobic010G228000 Sobic002G374100--Sobic004G036600 Sobic002G353400 Sobic002G353400 Sobic002G374100--Sobic002G353400 Sobic002G374100--Sobic008G177800 Sobic002G118600 Sobic002G118600 Sobic002G374100--Sobic002G118600 Sobic004G286600--Sobic008G177800 Sobic004G286600--Sobic006G231100 Sobic004G286600--Sobic002G294700 Sobic004G286600--Sobic001G077700 Sobic004G286600--Sobic010G234600 Sobic002G036100 Sobic002G036100 Sobic004G286600--Sobic002G036100 Sobic004G286600--Sobic002G248100 Sobic006G179500 Sobic006G179500 Sobic004G286600--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic004G286600--Sobic002G140300 Sobic001G077700--Sobic009G071800 Sobic001G077700--Sobic010G234600 Sobic002G203000 Sobic002G203000 Sobic001G077700--Sobic002G203000 Sobic001G077700--Sobic002G248100 Sobic001G077700--Sobic002G294700 Sobic001G077700--Sobic008G177800 Sobic001G077700--Sobic004G286600 Sobic001G077700--Sobic010G234700 Sobic001G489600 Sobic001G489600 Sobic001G077700--Sobic001G489600 Sobic010G246000--Sobic002G294700 Sobic010G246000--Sobic002G374100 Sobic003G019200 Sobic003G019200 Sobic010G246000--Sobic003G019200 Sobic001G147200 Sobic001G147200 Sobic010G246000--Sobic001G147200 Sobic010G245800 Sobic010G245800 Sobic010G246000--Sobic010G245800 Sobic010G246000--Sobic008G177800 Sobic010G246000--Sobic002G354900 Sobic010G246000--Sobic010G234600 Sobic010G246000--Sobic004G036600 Sobic004G036600--Sobic002G294700 Sobic004G036600--Sobic008G177800 Sobic004G036600--Sobic006G231100 Sobic001G173300 Sobic001G173300 Sobic004G036600--Sobic001G173300 Sobic004G036600--Sobic010G234600 Sobic004G036600--Sobic001G516600 Sobic004G036600--Sobic002G374100 Sobic009G141800 Sobic009G141800 Sobic004G036600--Sobic009G141800 Sobic009G217000 Sobic009G217000 Sobic004G036600--Sobic009G217000 Sobic004G228900 Sobic004G228900 Sobic002G278500--Sobic004G228900 Sobic001G441100 Sobic001G441100 Sobic002G278500--Sobic001G441100 Sobic001G338600 Sobic001G338600 Sobic002G278500--Sobic001G338600 Sobic005G122500 Sobic005G122500 Sobic002G278500--Sobic005G122500 Sobic009G217600 Sobic009G217600 Sobic002G278500--Sobic009G217600 Sobic002G278500--Sobic002G294700 Sobic002G278500--Sobic002G282300 Sobic001G341600 Sobic001G341600 Sobic002G278500--Sobic001G341600 Sobic002G278500--Sobic008G177800
Octagon: transcription factors


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