Gene annotation
Transcriptome id Sobic.006G165100.2
Synonym SbTri24, Sb06g024110
Functional annotation Trihelix Family (PubMedID : 24864043)
transcription factor like protein, putative, expressed
UniProt A0A1Z5RE87
Pfam PF13837
Panther DB PTHR31307 PTHR31307:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24860 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os04g45940.1 : transcription factor like protein, putative, expressed
MaizeGDB (Corn) Zm00025a056649 , Zm00025a010364
Brachypodium KQJ83873
Barley HORVU2Hr1G092900.1
Wheat TraesCS2D02G388500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G165100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
3 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
4 Sobic.001G052300 expressed protein -
5 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
6 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
7 Sobic.009G255500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
8 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
10 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
11 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
12 Sobic.001G538866 - -
13 Sobic.005G037000 cytochrome P450, putative, expressed -
14 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
15 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
16 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
17 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
18 Sobic.003G313800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
19 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
20 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)


Gene co-expression network
sample Sobic006G165100 Sobic006G165100 Sobic002G140300 Sobic002G140300 Sobic006G165100--Sobic002G140300 Sobic003G324400 Sobic003G324400 Sobic006G165100--Sobic003G324400 Sobic001G077400 Sobic001G077400 Sobic006G165100--Sobic001G077400 Sobic001G052300 Sobic001G052300 Sobic006G165100--Sobic001G052300 Sobic002G036100 Sobic002G036100 Sobic006G165100--Sobic002G036100 Sobic009G036100 Sobic009G036100 Sobic006G165100--Sobic009G036100 Sobic009G255500 Sobic009G255500 Sobic006G165100--Sobic009G255500 Sobic004G280900 Sobic004G280900 Sobic006G165100--Sobic004G280900 Sobic009G200700 Sobic009G200700 Sobic006G165100--Sobic009G200700 Sobic006G179500 Sobic006G179500 Sobic002G140300--Sobic006G179500 Sobic001G040200 Sobic001G040200 Sobic002G140300--Sobic001G040200 Sobic002G140300--Sobic006G165100 Sobic004G222500 Sobic004G222500 Sobic002G140300--Sobic004G222500 Sobic001G538866 Sobic001G538866 Sobic002G140300--Sobic001G538866 Sobic002G140300--Sobic009G036100 Sobic006G183400 Sobic006G183400 Sobic002G140300--Sobic006G183400 Sobic002G140300--Sobic003G324400 Sobic009G247900 Sobic009G247900 Sobic002G140300--Sobic009G247900 Sobic003G324400--Sobic006G165100 Sobic003G324400--Sobic001G040200 Sobic003G324400--Sobic002G140300 Sobic003G324400--Sobic009G036100 Sobic006G263600 Sobic006G263600 Sobic003G324400--Sobic006G263600 Sobic003G324400--Sobic009G247900 Sobic002G405600 Sobic002G405600 Sobic003G324400--Sobic002G405600 Sobic003G313800 Sobic003G313800 Sobic003G324400--Sobic003G313800 Sobic002G282300 Sobic002G282300 Sobic003G324400--Sobic002G282300 Sobic001G077400--Sobic004G280900 Sobic005G037000 Sobic005G037000 Sobic001G077400--Sobic005G037000 Sobic001G209800 Sobic001G209800 Sobic001G077400--Sobic001G209800 Sobic001G441100 Sobic001G441100 Sobic001G077400--Sobic001G441100 Sobic009G217600 Sobic009G217600 Sobic001G077400--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic001G077400--Sobic001G035000 Sobic001G077400--Sobic002G036100 Sobic001G077400--Sobic006G165100 Sobic001G341600 Sobic001G341600 Sobic001G077400--Sobic001G341600 Sobic001G052300--Sobic009G255500 Sobic001G052300--Sobic006G165100 Sobic001G052300--Sobic003G324400 Sobic001G052300--Sobic005G037000 Sobic009G183300 Sobic009G183300 Sobic001G052300--Sobic009G183300 Sobic001G052300--Sobic002G036100 Sobic001G052300--Sobic001G077400 Sobic001G052300--Sobic009G217600 Sobic001G052300--Sobic001G441100 Sobic002G036100--Sobic001G077400 Sobic002G036100--Sobic004G280900 Sobic002G036100--Sobic001G538866 Sobic002G036100--Sobic006G165100 Sobic002G036100--Sobic002G140300 Sobic001G259600 Sobic001G259600 Sobic002G036100--Sobic001G259600 Sobic002G036100--Sobic003G313800 Sobic002G036150 Sobic002G036150 Sobic002G036100--Sobic002G036150 Sobic002G036100--Sobic001G040200 Sobic009G036000 Sobic009G036000 Sobic009G036100--Sobic009G036000 Sobic007G074000 Sobic007G074000 Sobic009G036100--Sobic007G074000 Sobic001G320900 Sobic001G320900 Sobic009G036100--Sobic001G320900 Sobic001G407800 Sobic001G407800 Sobic009G036100--Sobic001G407800 Sobic009G036100--Sobic009G247900 Sobic009G036100--Sobic002G140300 Sobic003G369100 Sobic003G369100 Sobic009G036100--Sobic003G369100 Sobic009G036100--Sobic003G324400 Sobic001G258300 Sobic001G258300 Sobic009G036100--Sobic001G258300 Sobic008G177800 Sobic008G177800 Sobic009G255500--Sobic008G177800 Sobic009G255500--Sobic001G052300 Sobic009G255500--Sobic006G165100 Sobic009G255500--Sobic009G183300 Sobic002G294700 Sobic002G294700 Sobic009G255500--Sobic002G294700 Sobic002G248100 Sobic002G248100 Sobic009G255500--Sobic002G248100 Sobic001G101500 Sobic001G101500 Sobic009G255500--Sobic001G101500 Sobic009G255500--Sobic003G324400 Sobic010G234600 Sobic010G234600 Sobic009G255500--Sobic010G234600 Sobic004G280900--Sobic001G077400 Sobic004G280900--Sobic005G037000 Sobic004G280900--Sobic009G217600 Sobic004G280900--Sobic001G209800 Sobic004G280900--Sobic001G441100 Sobic004G280900--Sobic002G036100 Sobic004G280900--Sobic002G140300 Sobic004G280900--Sobic001G538866 Sobic004G280900--Sobic001G341600 Sobic009G200700--Sobic002G140300 Sobic009G200700--Sobic009G036100 Sobic009G200700--Sobic003G324400 Sobic002G356101 Sobic002G356101 Sobic009G200700--Sobic002G356101 Sobic009G200700--Sobic006G165100 Sobic009G200700--Sobic001G040200 Sobic009G129000 Sobic009G129000 Sobic009G200700--Sobic009G129000 Sobic006G230500 Sobic006G230500 Sobic009G200700--Sobic006G230500 Sobic009G200700--Sobic001G258300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.