Gene annotation
Transcriptome id Sobic.009G183300.1
Synonym GPDHC1, Sb09g024310
Functional annotation glycerol-3-phosphate dehydrogenase, putative, expressed
UniProt C5Z0B1
Pfam PF07479 PF01210
Panther DB PTHR11728:SF14 PTHR11728
NCBI CDD KOG2711; Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase
KEGG Orthology K00006; glycerol-3-phosphate dehydrogenase (NAD+)
Gene Ontology GO:0006072; glycerol-3-phosphate metabolic process GO:0009331glycerol-3-phosphate dehydrogenase complex GO:0004367glycerol-3-phosphate dehydrogenase [NAD+] activity GO:0005975carbohydrate metabolic process GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT2G41540 : 6-phosphogluconate dehydrogenase family protein
RAP-DB (Rice) LOC_Os01g58740.2 : glycerol-3-phosphate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a037857 , Zm00025a026083 , Zm00025a039841
Brachypodium KQK10192 , KQK05607
Barley HORVU3Hr1G078530.2 , HORVU3Hr1G078530.3 , HORVU3Hr1G078530.1 , HORVU3Hr1G078530.6 , HORVU3Hr1G078530.7 , HORVU3Hr1G078530.5 , HORVU3Hr1G078530.8 , HORVU3Hr1G078530.9 , HORVU3Hr1G104790.8 , HORVU3Hr1G104790.9 , HORVU3Hr1G104790.6 , HORVU3Hr1G104790.7 , HORVU3Hr1G104790.4 , HORVU3Hr1G104790.5 , HORVU3Hr1G104790.1 , HORVU3Hr1G078530.10 , HORVU3Hr1G104790.10 , HORVU3Hr1G104790.11 , HORVU1Hr1G067480.4 , HORVU1Hr1G067480.1 , HORVU1Hr1G067480.2 , HORVU1Hr1G067480.3 , HORVU3Hr1G104790.2 , HORVU3Hr1G104790.3
Wheat TraesCS3B02G521400 , TraesCS3D02G324000 , TraesCS3D02G324000 , TraesCS3D02G473600 , TraesCS3A02G478100 , TraesCS3A02G330600 , TraesCS3A02G330600 , TraesCS1A02G312400 , TraesCS1D02G312600 , TraesCS3B02G360600
Populus -


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cDNA sequences
Sobic.009G183300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
2 Sobic.003G387000 expressed protein -
3 Sobic.010G086200 GRAM domain containing protein, expressed -
4 Sobic.007G107850 - -
5 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
6 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
7 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
8 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
9 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
10 Sobic.002G356101 - -
11 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
12 Sobic.009G255500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
13 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
14 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
15 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
16 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
17 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
18 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
19 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G306300 expressed protein -


Gene co-expression network
sample Sobic009G183300 Sobic009G183300 Sobic004G065500 Sobic004G065500 Sobic009G183300--Sobic004G065500 Sobic003G387000 Sobic003G387000 Sobic009G183300--Sobic003G387000 Sobic010G086200 Sobic010G086200 Sobic009G183300--Sobic010G086200 Sobic007G107850 Sobic007G107850 Sobic009G183300--Sobic007G107850 Sobic009G129000 Sobic009G129000 Sobic009G183300--Sobic009G129000 Sobic006G231100 Sobic006G231100 Sobic009G183300--Sobic006G231100 Sobic006G267200 Sobic006G267200 Sobic009G183300--Sobic006G267200 Sobic006G231200 Sobic006G231200 Sobic009G183300--Sobic006G231200 Sobic008G177800 Sobic008G177800 Sobic009G183300--Sobic008G177800 Sobic004G065500--Sobic006G267200 Sobic001G459800 Sobic001G459800 Sobic004G065500--Sobic001G459800 Sobic003G393900 Sobic003G393900 Sobic004G065500--Sobic003G393900 Sobic007G074000 Sobic007G074000 Sobic004G065500--Sobic007G074000 Sobic004G065500--Sobic010G086200 Sobic004G306300 Sobic004G306300 Sobic004G065500--Sobic004G306300 Sobic003G228900 Sobic003G228900 Sobic004G065500--Sobic003G228900 Sobic004G321300 Sobic004G321300 Sobic004G065500--Sobic004G321300 Sobic009G247900 Sobic009G247900 Sobic004G065500--Sobic009G247900 Sobic003G334600 Sobic003G334600 Sobic003G387000--Sobic003G334600 Sobic004G280200 Sobic004G280200 Sobic003G387000--Sobic004G280200 Sobic001G405500 Sobic001G405500 Sobic003G387000--Sobic001G405500 Sobic003G387000--Sobic009G183300 Sobic001G320900 Sobic001G320900 Sobic003G387000--Sobic001G320900 Sobic009G141800 Sobic009G141800 Sobic003G387000--Sobic009G141800 Sobic005G103300 Sobic005G103300 Sobic003G387000--Sobic005G103300 Sobic003G387000--Sobic003G393900 Sobic003G369100 Sobic003G369100 Sobic003G387000--Sobic003G369100 Sobic010G086200--Sobic006G267200 Sobic010G086200--Sobic004G065500 Sobic010G086200--Sobic004G321300 Sobic010G086200--Sobic009G141800 Sobic010G086200--Sobic009G129000 Sobic009G143400 Sobic009G143400 Sobic010G086200--Sobic009G143400 Sobic010G086200--Sobic001G459800 Sobic009G033700 Sobic009G033700 Sobic010G086200--Sobic009G033700 Sobic010G086200--Sobic003G393900 Sobic007G107850--Sobic009G183300 Sobic002G140300 Sobic002G140300 Sobic007G107850--Sobic002G140300 Sobic006G179500 Sobic006G179500 Sobic007G107850--Sobic006G179500 Sobic004G061200 Sobic004G061200 Sobic007G107850--Sobic004G061200 Sobic002G359300 Sobic002G359300 Sobic007G107850--Sobic002G359300 Sobic002G245100 Sobic002G245100 Sobic007G107850--Sobic002G245100 Sobic006G165100 Sobic006G165100 Sobic007G107850--Sobic006G165100 Sobic003G037800 Sobic003G037800 Sobic007G107850--Sobic003G037800 Sobic002G356101 Sobic002G356101 Sobic007G107850--Sobic002G356101 Sobic009G129000--Sobic010G086200 Sobic005G028700 Sobic005G028700 Sobic009G129000--Sobic005G028700 Sobic009G129000--Sobic009G183300 Sobic009G129000--Sobic009G033700 Sobic009G200700 Sobic009G200700 Sobic009G129000--Sobic009G200700 Sobic009G129000--Sobic004G065500 Sobic010G217800 Sobic010G217800 Sobic009G129000--Sobic010G217800 Sobic009G129000--Sobic006G267200 Sobic010G204600 Sobic010G204600 Sobic009G129000--Sobic010G204600 Sobic006G231100--Sobic008G177800 Sobic006G230900 Sobic006G230900 Sobic006G231100--Sobic006G230900 Sobic006G231100--Sobic006G231200 Sobic006G231100--Sobic010G217800 Sobic002G415600 Sobic002G415600 Sobic006G231100--Sobic002G415600 Sobic010G234600 Sobic010G234600 Sobic006G231100--Sobic010G234600 Sobic004G286600 Sobic004G286600 Sobic006G231100--Sobic004G286600 Sobic002G294700 Sobic002G294700 Sobic006G231100--Sobic002G294700 Sobic002G282300 Sobic002G282300 Sobic006G231100--Sobic002G282300 Sobic006G267200--Sobic001G459800 Sobic006G267200--Sobic004G065500 Sobic006G267200--Sobic003G393900 Sobic006G267200--Sobic001G405500 Sobic006G267200--Sobic009G141800 Sobic006G267200--Sobic010G086200 Sobic004G146000 Sobic004G146000 Sobic006G267200--Sobic004G146000 Sobic004G141200 Sobic004G141200 Sobic006G267200--Sobic004G141200 Sobic006G267200--Sobic001G320900 Sobic006G231200--Sobic006G230900 Sobic006G231200--Sobic006G231100 Sobic007G213800 Sobic007G213800 Sobic006G231200--Sobic007G213800 Sobic006G231200--Sobic001G459800 Sobic006G231200--Sobic010G217800 Sobic003G144700 Sobic003G144700 Sobic006G231200--Sobic003G144700 Sobic006G231200--Sobic006G267200 Sobic006G231200--Sobic002G282300 Sobic006G231200--Sobic001G320900 Sobic008G177800--Sobic002G294700 Sobic008G177800--Sobic006G231100 Sobic008G177800--Sobic010G234600 Sobic008G177800--Sobic004G286600 Sobic008G177800--Sobic002G415600 Sobic008G177800--Sobic010G217800 Sobic009G255500 Sobic009G255500 Sobic008G177800--Sobic009G255500 Sobic008G177800--Sobic006G230900 Sobic001G077700 Sobic001G077700 Sobic008G177800--Sobic001G077700
Octagon: transcription factors


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