Gene annotation
Transcriptome id Sobic.003G387000.1
Synonym Sb03g042540
Functional annotation expressed protein
UniProt C5XET5
Pfam PF03188 PF03351
Panther DB PTHR23130 PTHR23130:SF87
NCBI CDD KOG4293; Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G07570 : Cytochrome b561/ferric reductase transmembrane with DOMON related domain
RAP-DB (Rice) LOC_Os04g41810.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ83357
Barley HORVU2Hr1G085570.6 , HORVU2Hr1G085570.5 , HORVU2Hr1G085570.4 , HORVU2Hr1G085570.3 , HORVU2Hr1G085570.2 , HORVU2Hr1G085570.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
2 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
3 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
4 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
5 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
6 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
7 Sobic.005G103300 dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
8 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
9 Sobic.003G369100 AP2 domain containing protein, expressed -
10 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.006G275200 CHCH domain containing protein, expressed -
12 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
13 Sobic.002G082600 DUF567 domain containing protein, putative, expressed -
14 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
15 Sobic.001G097600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@"salidroside biosynthesis, ethanol degradation II, phytol degradation"(PubMedID : 21853065)@dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
16 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
17 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
18 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.001G108200 expressed protein -
20 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase


Gene co-expression network
sample Sobic003G387000 Sobic003G387000 Sobic003G334600 Sobic003G334600 Sobic003G387000--Sobic003G334600 Sobic004G280200 Sobic004G280200 Sobic003G387000--Sobic004G280200 Sobic001G405500 Sobic001G405500 Sobic003G387000--Sobic001G405500 Sobic009G183300 Sobic009G183300 Sobic003G387000--Sobic009G183300 Sobic001G320900 Sobic001G320900 Sobic003G387000--Sobic001G320900 Sobic009G141800 Sobic009G141800 Sobic003G387000--Sobic009G141800 Sobic005G103300 Sobic005G103300 Sobic003G387000--Sobic005G103300 Sobic003G393900 Sobic003G393900 Sobic003G387000--Sobic003G393900 Sobic003G369100 Sobic003G369100 Sobic003G387000--Sobic003G369100 Sobic003G334600--Sobic003G369100 Sobic001G038900 Sobic001G038900 Sobic003G334600--Sobic001G038900 Sobic008G136400 Sobic008G136400 Sobic003G334600--Sobic008G136400 Sobic002G140400 Sobic002G140400 Sobic003G334600--Sobic002G140400 Sobic008G050600 Sobic008G050600 Sobic003G334600--Sobic008G050600 Sobic001G308300 Sobic001G308300 Sobic003G334600--Sobic001G308300 Sobic007G074000 Sobic007G074000 Sobic003G334600--Sobic007G074000 Sobic003G334600--Sobic003G387000 Sobic003G345100 Sobic003G345100 Sobic003G334600--Sobic003G345100 Sobic009G169000 Sobic009G169000 Sobic004G280200--Sobic009G169000 Sobic004G280200--Sobic001G405500 Sobic004G280200--Sobic003G369100 Sobic007G026600 Sobic007G026600 Sobic004G280200--Sobic007G026600 Sobic003G086600 Sobic003G086600 Sobic004G280200--Sobic003G086600 Sobic003G367200 Sobic003G367200 Sobic004G280200--Sobic003G367200 Sobic003G144700 Sobic003G144700 Sobic004G280200--Sobic003G144700 Sobic006G275200 Sobic006G275200 Sobic004G280200--Sobic006G275200 Sobic002G261200 Sobic002G261200 Sobic004G280200--Sobic002G261200 Sobic001G405500--Sobic003G086600 Sobic003G148600 Sobic003G148600 Sobic001G405500--Sobic003G148600 Sobic003G394400 Sobic003G394400 Sobic001G405500--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic001G405500--Sobic003G144700 Sobic003G355100 Sobic003G355100 Sobic001G405500--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200 Sobic004G065500 Sobic004G065500 Sobic009G183300--Sobic004G065500 Sobic009G183300--Sobic003G387000 Sobic010G086200 Sobic010G086200 Sobic009G183300--Sobic010G086200 Sobic007G107850 Sobic007G107850 Sobic009G183300--Sobic007G107850 Sobic009G129000 Sobic009G129000 Sobic009G183300--Sobic009G129000 Sobic006G231100 Sobic006G231100 Sobic009G183300--Sobic006G231100 Sobic009G183300--Sobic006G267200 Sobic006G231200 Sobic006G231200 Sobic009G183300--Sobic006G231200 Sobic008G177800 Sobic008G177800 Sobic009G183300--Sobic008G177800 Sobic009G036000 Sobic009G036000 Sobic001G320900--Sobic009G036000 Sobic001G320900--Sobic003G144700 Sobic001G320900--Sobic009G169000 Sobic001G391500 Sobic001G391500 Sobic001G320900--Sobic001G391500 Sobic001G320900--Sobic003G148600 Sobic009G036100 Sobic009G036100 Sobic001G320900--Sobic009G036100 Sobic003G197200 Sobic003G197200 Sobic001G320900--Sobic003G197200 Sobic001G320900--Sobic003G355100 Sobic001G320900--Sobic001G405500 Sobic009G141800--Sobic006G267200 Sobic009G141800--Sobic010G086200 Sobic009G141800--Sobic003G393900 Sobic009G141800--Sobic004G065500 Sobic004G187900 Sobic004G187900 Sobic009G141800--Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic009G141800--Sobic001G281400 Sobic009G008900 Sobic009G008900 Sobic009G141800--Sobic009G008900 Sobic009G141800--Sobic003G387000 Sobic001G459800 Sobic001G459800 Sobic009G141800--Sobic001G459800 Sobic002G414600 Sobic002G414600 Sobic005G103300--Sobic002G414600 Sobic005G103500 Sobic005G103500 Sobic005G103300--Sobic005G103500 Sobic005G103300--Sobic003G334600 Sobic005G103300--Sobic003G387000 Sobic001G252300 Sobic001G252300 Sobic005G103300--Sobic001G252300 Sobic001G097600 Sobic001G097600 Sobic005G103300--Sobic001G097600 Sobic001G119000 Sobic001G119000 Sobic005G103300--Sobic001G119000 Sobic002G082600 Sobic002G082600 Sobic005G103300--Sobic002G082600 Sobic002G359300 Sobic002G359300 Sobic005G103300--Sobic002G359300 Sobic004G141200 Sobic004G141200 Sobic003G393900--Sobic004G141200 Sobic003G393900--Sobic001G108200 Sobic003G393900--Sobic001G459800 Sobic004G100700 Sobic004G100700 Sobic003G393900--Sobic004G100700 Sobic002G188900 Sobic002G188900 Sobic003G393900--Sobic002G188900 Sobic003G393900--Sobic004G065500 Sobic003G393900--Sobic006G267200 Sobic005G011300 Sobic005G011300 Sobic003G393900--Sobic005G011300 Sobic003G393900--Sobic003G369100 Sobic003G369100--Sobic004G141200 Sobic003G369100--Sobic007G074000 Sobic001G138600 Sobic001G138600 Sobic003G369100--Sobic001G138600 Sobic003G369100--Sobic001G108200 Sobic001G140900 Sobic001G140900 Sobic003G369100--Sobic001G140900 Sobic001G112200 Sobic001G112200 Sobic003G369100--Sobic001G112200 Sobic003G369100--Sobic003G345100 Sobic003G369100--Sobic008G050600 Sobic003G369100--Sobic001G308300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.