Gene annotation
Transcriptome id Sobic.001G405500.1
Synonym PDC2, Sb01g038360
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
pyruvate decarboxylase isozyme 2, putative, expressed
UniProt C5WNH9
Pfam PF02775 PF00205 PF02776
Panther DB PTHR18968 PTHR18968:SF137
NCBI CDD -
KEGG Orthology K01568; PDC, pyruvate decarboxylase
Gene Ontology GO:0003824; catalytic activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT5G54960 : pyruvate decarboxylase-2
RAP-DB (Rice) LOC_Os03g18220.1 : pyruvate decarboxylase isozyme 2, putative, expressed
MaizeGDB (Corn) Zm00025a035667 , Zm00025a049263 , Zm00025a037766 , Zm00025a002003
Brachypodium PNT77590 , KQK14495
Barley HORVU3Hr1G018650.5 , HORVU3Hr1G018650.4 , HORVU3Hr1G018650.1 , HORVU3Hr1G018650.3 , HORVU3Hr1G018650.2 , HORVU2Hr1G012660.2 , HORVU2Hr1G014390.4 , HORVU2Hr1G014390.1 , HORVU2Hr1G014390.3 , HORVU2Hr1G014390.2 , HORVU4Hr1G056050.8 , HORVU4Hr1G056050.9 , HORVU4Hr1G056050.2 , HORVU4Hr1G056050.3 , HORVU4Hr1G056050.1 , HORVU4Hr1G056050.6 , HORVU4Hr1G056050.7 , HORVU4Hr1G056050.4 , HORVU4Hr1G056050.5 , HORVU2Hr1G012650.2 , HORVU2Hr1G012650.1 , HORVU2Hr1G012660.3 , HORVU2Hr1G012660.1
Wheat TraesCS2A02G088400 , TraesCS2A02G088600 , TraesCSU02G014800 , TraesCS2B02G103900 , TraesCS4B02G193200 , TraesCS3D02G104300 , TraesCS4D02G194200 , TraesCS4D02G194200 , TraesCS3B02G119800 , TraesCS4A02G110900 , TraesCS4A02G110900 , TraesCS2D02G086100 , TraesCS2D02G086300 , TraesCS2D02G086000 , TraesCS2B02G583600 , TraesCS2B02G583600 , TraesCS3A02G102200 , TraesCS3A02G102200 , TraesCS2B02G104000 , TraesCS2A02G552200 , TraesCS4B02G193200
Populus -


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cDNA sequences
Sobic.001G405500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
2 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
3 Sobic.003G394400 ubiquitin family protein, putative, expressed -
4 Sobic.001G108200 expressed protein -
5 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
6 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
7 Sobic.003G355100 expressed protein -
8 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
10 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
11 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
12 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
13 Sobic.004G166200 expressed protein -
14 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
15 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
16 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
17 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
19 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
20 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase


Gene co-expression network
sample Sobic001G405500 Sobic001G405500 Sobic003G086600 Sobic003G086600 Sobic001G405500--Sobic003G086600 Sobic003G148600 Sobic003G148600 Sobic001G405500--Sobic003G148600 Sobic003G394400 Sobic003G394400 Sobic001G405500--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic001G405500--Sobic001G108200 Sobic007G026600 Sobic007G026600 Sobic001G405500--Sobic007G026600 Sobic003G144700 Sobic003G144700 Sobic001G405500--Sobic003G144700 Sobic003G355100 Sobic003G355100 Sobic001G405500--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200 Sobic002G068600 Sobic002G068600 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic003G086600--Sobic001G405500 Sobic003G086600--Sobic001G108200 Sobic004G166200 Sobic004G166200 Sobic003G086600--Sobic004G166200 Sobic003G086600--Sobic003G382800 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic003G197200 Sobic003G197200 Sobic003G148600--Sobic003G197200 Sobic003G123600 Sobic003G123600 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic001G107800 Sobic001G107800 Sobic003G148600--Sobic001G107800 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic003G394400--Sobic002G068600 Sobic007G214400 Sobic007G214400 Sobic003G394400--Sobic007G214400 Sobic003G394400--Sobic003G086600 Sobic001G371800 Sobic001G371800 Sobic003G394400--Sobic001G371800 Sobic003G394400--Sobic004G166200 Sobic003G394400--Sobic001G107800 Sobic003G394400--Sobic003G355100 Sobic003G394400--Sobic003G148600 Sobic003G394400--Sobic007G214600 Sobic004G141200 Sobic004G141200 Sobic001G108200--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic001G108200--Sobic003G393900 Sobic004G100700 Sobic004G100700 Sobic001G108200--Sobic004G100700 Sobic003G369100 Sobic003G369100 Sobic001G108200--Sobic003G369100 Sobic001G108200--Sobic003G086600 Sobic001G108200--Sobic003G355100 Sobic001G108200--Sobic007G214600 Sobic001G108200--Sobic003G382800 Sobic005G099000 Sobic005G099000 Sobic001G108200--Sobic005G099000 Sobic007G026600--Sobic002G068600 Sobic007G026600--Sobic001G405500 Sobic007G026600--Sobic003G148600 Sobic007G026600--Sobic001G107800 Sobic007G026600--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic007G026600--Sobic004G280200 Sobic007G026600--Sobic003G123600 Sobic007G026600--Sobic003G394400 Sobic007G026600--Sobic003G144700 Sobic003G144700--Sobic003G197200 Sobic003G144700--Sobic003G148600 Sobic007G213800 Sobic007G213800 Sobic003G144700--Sobic007G213800 Sobic001G320900 Sobic001G320900 Sobic003G144700--Sobic001G320900 Sobic003G144700--Sobic003G355100 Sobic001G391500 Sobic001G391500 Sobic003G144700--Sobic001G391500 Sobic009G169000 Sobic009G169000 Sobic003G144700--Sobic009G169000 Sobic003G144700--Sobic003G123600 Sobic006G230900 Sobic006G230900 Sobic003G144700--Sobic006G230900 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic001G481300 Sobic001G481300 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic004G109600 Sobic004G109600 Sobic003G355100--Sobic004G109600 Sobic003G355100--Sobic003G394400 Sobic003G355100--Sobic001G108200 Sobic003G355100--Sobic003G144700 Sobic003G355100--Sobic004G166200 Sobic001G138600 Sobic001G138600 Sobic003G382800--Sobic001G138600 Sobic003G382800--Sobic004G141200 Sobic001G169500 Sobic001G169500 Sobic003G382800--Sobic001G169500 Sobic003G382800--Sobic001G108200 Sobic003G382800--Sobic003G394400 Sobic003G382800--Sobic004G166200 Sobic003G382800--Sobic002G068600 Sobic003G382800--Sobic003G086600 Sobic003G382800--Sobic003G148600 Sobic001G459800 Sobic001G459800 Sobic006G267200--Sobic001G459800 Sobic004G065500 Sobic004G065500 Sobic006G267200--Sobic004G065500 Sobic006G267200--Sobic003G393900 Sobic006G267200--Sobic001G405500 Sobic009G141800 Sobic009G141800 Sobic006G267200--Sobic009G141800 Sobic010G086200 Sobic010G086200 Sobic006G267200--Sobic010G086200 Sobic004G146000 Sobic004G146000 Sobic006G267200--Sobic004G146000 Sobic006G267200--Sobic004G141200 Sobic006G267200--Sobic001G320900
Octagon: transcription factors


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