Gene annotation
Transcriptome id Sobic.004G166200.1
Synonym Sb04g021760
Functional annotation expressed protein
UniProt C5XTF7
Pfam -
Panther DB PTHR34120 PTHR34120:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os02g33060.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G394400 ubiquitin family protein, putative, expressed -
2 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
3 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
4 Sobic.001G371800 expressed protein -
5 Sobic.007G214600 EF hand family protein, putative, expressed -
6 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G355100 expressed protein -
8 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
10 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
11 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
12 Sobic.002G261200 expressed protein -
13 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
15 Sobic.001G201200 - -
16 Sobic.001G108200 expressed protein -
17 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
19 Sobic.007G214400 EF hand family protein, putative, expressed -
20 Sobic.001G169500 - -


Gene co-expression network
sample Sobic004G166200 Sobic004G166200 Sobic003G394400 Sobic003G394400 Sobic004G166200--Sobic003G394400 Sobic002G068600 Sobic002G068600 Sobic004G166200--Sobic002G068600 Sobic003G148600 Sobic003G148600 Sobic004G166200--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic004G166200--Sobic001G371800 Sobic007G214600 Sobic007G214600 Sobic004G166200--Sobic007G214600 Sobic001G107800 Sobic001G107800 Sobic004G166200--Sobic001G107800 Sobic003G355100 Sobic003G355100 Sobic004G166200--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic004G166200--Sobic003G382800 Sobic003G197200 Sobic003G197200 Sobic004G166200--Sobic003G197200 Sobic003G394400--Sobic002G068600 Sobic007G214400 Sobic007G214400 Sobic003G394400--Sobic007G214400 Sobic003G086600 Sobic003G086600 Sobic003G394400--Sobic003G086600 Sobic003G394400--Sobic001G371800 Sobic003G394400--Sobic004G166200 Sobic003G394400--Sobic001G107800 Sobic003G394400--Sobic003G355100 Sobic003G394400--Sobic003G148600 Sobic003G394400--Sobic007G214600 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic002G068600--Sobic004G166200 Sobic001G254100 Sobic001G254100 Sobic002G068600--Sobic001G254100 Sobic002G068600--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic002G068600--Sobic002G261200 Sobic007G026600 Sobic007G026600 Sobic002G068600--Sobic007G026600 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100 Sobic003G148600--Sobic003G197200 Sobic003G123600 Sobic003G123600 Sobic003G148600--Sobic003G123600 Sobic003G144700 Sobic003G144700 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic001G405500 Sobic001G405500 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic001G371800--Sobic007G214400 Sobic001G371800--Sobic003G394400 Sobic001G201200 Sobic001G201200 Sobic001G371800--Sobic001G201200 Sobic002G389000 Sobic002G389000 Sobic001G371800--Sobic002G389000 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600 Sobic007G214600--Sobic003G355100 Sobic007G214600--Sobic003G197200 Sobic004G109600 Sobic004G109600 Sobic007G214600--Sobic004G109600 Sobic007G214600--Sobic003G148600 Sobic001G481300 Sobic001G481300 Sobic007G214600--Sobic001G481300 Sobic010G198500 Sobic010G198500 Sobic007G214600--Sobic010G198500 Sobic007G214600--Sobic001G371800 Sobic007G214600--Sobic003G394400 Sobic007G214600--Sobic004G166200 Sobic001G107800--Sobic003G123600 Sobic001G107800--Sobic003G394400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G107800--Sobic001G371800 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic001G107800--Sobic002G068600 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic003G355100--Sobic004G109600 Sobic003G355100--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic003G355100--Sobic001G108200 Sobic003G355100--Sobic003G144700 Sobic003G355100--Sobic004G166200 Sobic001G138600 Sobic001G138600 Sobic003G382800--Sobic001G138600 Sobic004G141200 Sobic004G141200 Sobic003G382800--Sobic004G141200 Sobic001G169500 Sobic001G169500 Sobic003G382800--Sobic001G169500 Sobic003G382800--Sobic001G108200 Sobic003G382800--Sobic003G394400 Sobic003G382800--Sobic004G166200 Sobic003G382800--Sobic002G068600 Sobic003G382800--Sobic003G086600 Sobic003G382800--Sobic003G148600 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G197200--Sobic003G355100 Sobic003G197200--Sobic003G144700 Sobic001G443800 Sobic001G443800 Sobic003G197200--Sobic001G443800 Sobic003G197200--Sobic001G481300 Sobic003G197200--Sobic001G201200 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600
Octagon: transcription factors


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