Gene annotation
Transcriptome id Sobic.001G169500.1
Synonym
Functional annotation -
UniProt A0A1B6QJE2
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
3 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
4 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
5 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
6 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
7 Sobic.006G249300 expressed protein -
8 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
9 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
10 Sobic.008G186100 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
12 Sobic.006G046900 expressed protein -
13 Sobic.001G138600 VQ domain containing protein, putative, expressed -
14 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
15 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
16 Sobic.004G166200 expressed protein -
17 Sobic.001G139100 expressed protein -
18 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.009G229000 expressed protein -
20 Sobic.001G108200 expressed protein -


Gene co-expression network
sample Sobic001G169500 Sobic001G169500 Sobic005G011300 Sobic005G011300 Sobic001G169500--Sobic005G011300 Sobic004G100700 Sobic004G100700 Sobic001G169500--Sobic004G100700 Sobic005G099000 Sobic005G099000 Sobic001G169500--Sobic005G099000 Sobic003G382800 Sobic003G382800 Sobic001G169500--Sobic003G382800 Sobic004G336500 Sobic004G336500 Sobic001G169500--Sobic004G336500 Sobic003G432700 Sobic003G432700 Sobic001G169500--Sobic003G432700 Sobic006G249300 Sobic006G249300 Sobic001G169500--Sobic006G249300 Sobic005G107900 Sobic005G107900 Sobic001G169500--Sobic005G107900 Sobic002G068600 Sobic002G068600 Sobic001G169500--Sobic002G068600 Sobic005G011300--Sobic004G100700 Sobic005G011300--Sobic001G169500 Sobic002G188900 Sobic002G188900 Sobic005G011300--Sobic002G188900 Sobic005G011300--Sobic005G107900 Sobic005G011300--Sobic003G432700 Sobic004G141200 Sobic004G141200 Sobic005G011300--Sobic004G141200 Sobic001G140900 Sobic001G140900 Sobic005G011300--Sobic001G140900 Sobic003G084400 Sobic003G084400 Sobic005G011300--Sobic003G084400 Sobic004G171400 Sobic004G171400 Sobic005G011300--Sobic004G171400 Sobic004G100700--Sobic005G011300 Sobic004G100700--Sobic002G188900 Sobic004G100700--Sobic001G140900 Sobic001G108200 Sobic001G108200 Sobic004G100700--Sobic001G108200 Sobic004G100700--Sobic001G169500 Sobic004G100700--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic004G100700--Sobic003G393900 Sobic004G301000 Sobic004G301000 Sobic004G100700--Sobic004G301000 Sobic001G367600 Sobic001G367600 Sobic004G100700--Sobic001G367600 Sobic005G063100 Sobic005G063100 Sobic005G099000--Sobic005G063100 Sobic003G345100 Sobic003G345100 Sobic005G099000--Sobic003G345100 Sobic003G116800 Sobic003G116800 Sobic005G099000--Sobic003G116800 Sobic005G099000--Sobic004G141200 Sobic005G099000--Sobic001G169500 Sobic001G435000 Sobic001G435000 Sobic005G099000--Sobic001G435000 Sobic004G208700 Sobic004G208700 Sobic005G099000--Sobic004G208700 Sobic005G099000--Sobic005G011300 Sobic005G099000--Sobic001G108200 Sobic001G138600 Sobic001G138600 Sobic003G382800--Sobic001G138600 Sobic003G382800--Sobic004G141200 Sobic003G382800--Sobic001G169500 Sobic003G382800--Sobic001G108200 Sobic003G394400 Sobic003G394400 Sobic003G382800--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic003G382800--Sobic004G166200 Sobic003G382800--Sobic002G068600 Sobic003G086600 Sobic003G086600 Sobic003G382800--Sobic003G086600 Sobic003G148600 Sobic003G148600 Sobic003G382800--Sobic003G148600 Sobic009G069800 Sobic009G069800 Sobic004G336500--Sobic009G069800 Sobic003G367200 Sobic003G367200 Sobic004G336500--Sobic003G367200 Sobic004G336500--Sobic001G169500 Sobic007G008100 Sobic007G008100 Sobic004G336500--Sobic007G008100 Sobic001G112200 Sobic001G112200 Sobic004G336500--Sobic001G112200 Sobic010G225251 Sobic010G225251 Sobic004G336500--Sobic010G225251 Sobic004G336500--Sobic003G382800 Sobic001G280800 Sobic001G280800 Sobic004G336500--Sobic001G280800 Sobic004G336500--Sobic001G138600 Sobic003G432700--Sobic005G107900 Sobic001G502400 Sobic001G502400 Sobic003G432700--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic003G432700--Sobic003G228900 Sobic003G432700--Sobic005G011300 Sobic001G313600 Sobic001G313600 Sobic003G432700--Sobic001G313600 Sobic009G184000 Sobic009G184000 Sobic003G432700--Sobic009G184000 Sobic006G075400 Sobic006G075400 Sobic003G432700--Sobic006G075400 Sobic003G432700--Sobic001G169500 Sobic007G169700 Sobic007G169700 Sobic003G432700--Sobic007G169700 Sobic001G139100 Sobic001G139100 Sobic006G249300--Sobic001G139100 Sobic006G249300--Sobic001G169500 Sobic006G249300--Sobic004G100700 Sobic008G186100 Sobic008G186100 Sobic006G249300--Sobic008G186100 Sobic006G249300--Sobic005G011300 Sobic006G249300--Sobic003G086600 Sobic010G259600 Sobic010G259600 Sobic006G249300--Sobic010G259600 Sobic006G249300--Sobic003G084400 Sobic009G183400 Sobic009G183400 Sobic006G249300--Sobic009G183400 Sobic005G107900--Sobic001G502400 Sobic005G107900--Sobic001G313600 Sobic005G107900--Sobic003G432700 Sobic005G107900--Sobic005G011300 Sobic006G235100 Sobic006G235100 Sobic005G107900--Sobic006G235100 Sobic005G107900--Sobic006G075400 Sobic005G107900--Sobic009G184000 Sobic009G188000 Sobic009G188000 Sobic005G107900--Sobic009G188000 Sobic005G107900--Sobic001G169500 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic002G068600--Sobic004G166200 Sobic001G254100 Sobic001G254100 Sobic002G068600--Sobic001G254100 Sobic001G107800 Sobic001G107800 Sobic002G068600--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic002G068600--Sobic002G261200 Sobic007G026600 Sobic007G026600 Sobic002G068600--Sobic007G026600 Sobic007G214400 Sobic007G214400 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100
Octagon: transcription factors


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