Gene annotation
Transcriptome id Sobic.006G046900.1
Synonym Sb06g011810
Functional annotation expressed protein
UniProt C5YEB3
Pfam PF05553
Panther DB PTHR33450 PTHR33450:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47920 : -
RAP-DB (Rice) LOC_Os04g31350.1 : expressed protein
MaizeGDB (Corn) Zm00025a011803
Brachypodium KQJ82250
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G169500 - -
2 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.006G249300 expressed protein -
4 Sobic.001G139100 expressed protein -
5 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
6 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
7 Sobic.008G186100 helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
10 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.004G166200 expressed protein -
12 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
13 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
14 Sobic.003G394400 ubiquitin family protein, putative, expressed -
15 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
17 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
18 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
19 Sobic.004G171400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.003G084400 ZOS1-03 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic006G046900 Sobic006G046900 Sobic001G169500 Sobic001G169500 Sobic006G046900--Sobic001G169500 Sobic005G011300 Sobic005G011300 Sobic006G046900--Sobic005G011300 Sobic006G249300 Sobic006G249300 Sobic006G046900--Sobic006G249300 Sobic001G139100 Sobic001G139100 Sobic006G046900--Sobic001G139100 Sobic003G377100 Sobic003G377100 Sobic006G046900--Sobic003G377100 Sobic001G459800 Sobic001G459800 Sobic006G046900--Sobic001G459800 Sobic008G186100 Sobic008G186100 Sobic006G046900--Sobic008G186100 Sobic004G336500 Sobic004G336500 Sobic006G046900--Sobic004G336500 Sobic002G068600 Sobic002G068600 Sobic006G046900--Sobic002G068600 Sobic001G169500--Sobic005G011300 Sobic004G100700 Sobic004G100700 Sobic001G169500--Sobic004G100700 Sobic005G099000 Sobic005G099000 Sobic001G169500--Sobic005G099000 Sobic003G382800 Sobic003G382800 Sobic001G169500--Sobic003G382800 Sobic001G169500--Sobic004G336500 Sobic003G432700 Sobic003G432700 Sobic001G169500--Sobic003G432700 Sobic001G169500--Sobic006G249300 Sobic005G107900 Sobic005G107900 Sobic001G169500--Sobic005G107900 Sobic001G169500--Sobic002G068600 Sobic005G011300--Sobic004G100700 Sobic005G011300--Sobic001G169500 Sobic002G188900 Sobic002G188900 Sobic005G011300--Sobic002G188900 Sobic005G011300--Sobic005G107900 Sobic005G011300--Sobic003G432700 Sobic004G141200 Sobic004G141200 Sobic005G011300--Sobic004G141200 Sobic001G140900 Sobic001G140900 Sobic005G011300--Sobic001G140900 Sobic003G084400 Sobic003G084400 Sobic005G011300--Sobic003G084400 Sobic004G171400 Sobic004G171400 Sobic005G011300--Sobic004G171400 Sobic006G249300--Sobic001G139100 Sobic006G249300--Sobic001G169500 Sobic006G249300--Sobic004G100700 Sobic006G249300--Sobic008G186100 Sobic006G249300--Sobic005G011300 Sobic003G086600 Sobic003G086600 Sobic006G249300--Sobic003G086600 Sobic010G259600 Sobic010G259600 Sobic006G249300--Sobic010G259600 Sobic006G249300--Sobic003G084400 Sobic009G183400 Sobic009G183400 Sobic006G249300--Sobic009G183400 Sobic001G139100--Sobic006G249300 Sobic009G229000 Sobic009G229000 Sobic001G139100--Sobic009G229000 Sobic001G139100--Sobic008G186100 Sobic001G139100--Sobic001G169500 Sobic001G139100--Sobic010G259600 Sobic003G319500 Sobic003G319500 Sobic001G139100--Sobic003G319500 Sobic004G046200 Sobic004G046200 Sobic001G139100--Sobic004G046200 Sobic001G389000 Sobic001G389000 Sobic001G139100--Sobic001G389000 Sobic007G087200 Sobic007G087200 Sobic001G139100--Sobic007G087200 Sobic003G148600 Sobic003G148600 Sobic003G377100--Sobic003G148600 Sobic003G377100--Sobic002G068600 Sobic003G377100--Sobic003G086600 Sobic001G405500 Sobic001G405500 Sobic003G377100--Sobic001G405500 Sobic008G118700 Sobic008G118700 Sobic003G377100--Sobic008G118700 Sobic004G166200 Sobic004G166200 Sobic003G377100--Sobic004G166200 Sobic003G355100 Sobic003G355100 Sobic003G377100--Sobic003G355100 Sobic001G108200 Sobic001G108200 Sobic003G377100--Sobic001G108200 Sobic003G197200 Sobic003G197200 Sobic003G377100--Sobic003G197200 Sobic001G391500 Sobic001G391500 Sobic001G459800--Sobic001G391500 Sobic006G267200 Sobic006G267200 Sobic001G459800--Sobic006G267200 Sobic001G459800--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic001G459800--Sobic003G393900 Sobic003G228900 Sobic003G228900 Sobic001G459800--Sobic003G228900 Sobic004G065500 Sobic004G065500 Sobic001G459800--Sobic004G065500 Sobic001G138600 Sobic001G138600 Sobic001G459800--Sobic001G138600 Sobic007G074000 Sobic007G074000 Sobic001G459800--Sobic007G074000 Sobic001G459800--Sobic005G011300 Sobic008G186100--Sobic005G011300 Sobic002G287100 Sobic002G287100 Sobic008G186100--Sobic002G287100 Sobic008G186100--Sobic004G100700 Sobic008G186100--Sobic001G169500 Sobic010G029700 Sobic010G029700 Sobic008G186100--Sobic010G029700 Sobic008G186100--Sobic006G249300 Sobic008G186100--Sobic001G139100 Sobic002G250000 Sobic002G250000 Sobic008G186100--Sobic002G250000 Sobic006G092500 Sobic006G092500 Sobic008G186100--Sobic006G092500 Sobic009G069800 Sobic009G069800 Sobic004G336500--Sobic009G069800 Sobic003G367200 Sobic003G367200 Sobic004G336500--Sobic003G367200 Sobic004G336500--Sobic001G169500 Sobic007G008100 Sobic007G008100 Sobic004G336500--Sobic007G008100 Sobic001G112200 Sobic001G112200 Sobic004G336500--Sobic001G112200 Sobic010G225251 Sobic010G225251 Sobic004G336500--Sobic010G225251 Sobic004G336500--Sobic003G382800 Sobic001G280800 Sobic001G280800 Sobic004G336500--Sobic001G280800 Sobic004G336500--Sobic001G138600 Sobic003G394400 Sobic003G394400 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic002G068600--Sobic004G166200 Sobic001G254100 Sobic001G254100 Sobic002G068600--Sobic001G254100 Sobic001G107800 Sobic001G107800 Sobic002G068600--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic002G068600--Sobic002G261200 Sobic007G026600 Sobic007G026600 Sobic002G068600--Sobic007G026600 Sobic007G214400 Sobic007G214400 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100
Octagon: transcription factors


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