Gene annotation
Transcriptome id Sobic.004G336500.1
Synonym IAA12, BDL, Sb04g036430, SbIAA13;auxin/indole-3-acetic acid (Aux/IAA), SbIAA13, auxin/indole-3-acetic acid (Aux/IAA)
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment" (PubMedID : 20499123)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt A0A194YSU1
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF22
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G04550 : AUX/IAA transcriptional regulator family protein
RAP-DB (Rice) LOC_Os02g56120.2 : OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a022520
Brachypodium KQK01237
Barley HORVU6Hr1G088140.1 , HORVU6Hr1G088140.2
Wheat TraesCS6D02G357500 , TraesCS6A02G373300 , TraesCS6B02G411000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase
2 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
3 Sobic.001G169500 - -
4 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
5 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.010G225251 - -
7 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.001G280800 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.001G138600 VQ domain containing protein, putative, expressed -
10 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
11 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G477600 zinc finger protein, putative, expressed -
13 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
14 Sobic.009G229000 expressed protein -
15 Sobic.002G261200 expressed protein -
16 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
17 Sobic.009G154200 MYB family transcription factor, putative, expressed -
18 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
19 Sobic.002G389400 OsRCI2-10 - Hydrophobic protein LTI6A, expressed -
20 Sobic.003G369100 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic004G336500 Sobic004G336500 Sobic009G069800 Sobic009G069800 Sobic004G336500--Sobic009G069800 Sobic003G367200 Sobic003G367200 Sobic004G336500--Sobic003G367200 Sobic001G169500 Sobic001G169500 Sobic004G336500--Sobic001G169500 Sobic007G008100 Sobic007G008100 Sobic004G336500--Sobic007G008100 Sobic001G112200 Sobic001G112200 Sobic004G336500--Sobic001G112200 Sobic010G225251 Sobic010G225251 Sobic004G336500--Sobic010G225251 Sobic003G382800 Sobic003G382800 Sobic004G336500--Sobic003G382800 Sobic001G280800 Sobic001G280800 Sobic004G336500--Sobic001G280800 Sobic001G138600 Sobic001G138600 Sobic004G336500--Sobic001G138600 Sobic009G069800--Sobic004G336500 Sobic009G069800--Sobic007G008100 Sobic009G069800--Sobic010G225251 Sobic002G042000 Sobic002G042000 Sobic009G069800--Sobic002G042000 Sobic009G069800--Sobic001G280800 Sobic001G477600 Sobic001G477600 Sobic009G069800--Sobic001G477600 Sobic004G236100 Sobic004G236100 Sobic009G069800--Sobic004G236100 Sobic010G166500 Sobic010G166500 Sobic009G069800--Sobic010G166500 Sobic003G041600 Sobic003G041600 Sobic009G069800--Sobic003G041600 Sobic003G367200--Sobic004G336500 Sobic006G275200 Sobic006G275200 Sobic003G367200--Sobic006G275200 Sobic003G086600 Sobic003G086600 Sobic003G367200--Sobic003G086600 Sobic003G367200--Sobic003G382800 Sobic001G397200 Sobic001G397200 Sobic003G367200--Sobic001G397200 Sobic004G280200 Sobic004G280200 Sobic003G367200--Sobic004G280200 Sobic007G015600 Sobic007G015600 Sobic003G367200--Sobic007G015600 Sobic001G140900 Sobic001G140900 Sobic003G367200--Sobic001G140900 Sobic003G369100 Sobic003G369100 Sobic003G367200--Sobic003G369100 Sobic005G011300 Sobic005G011300 Sobic001G169500--Sobic005G011300 Sobic004G100700 Sobic004G100700 Sobic001G169500--Sobic004G100700 Sobic005G099000 Sobic005G099000 Sobic001G169500--Sobic005G099000 Sobic001G169500--Sobic003G382800 Sobic001G169500--Sobic004G336500 Sobic003G432700 Sobic003G432700 Sobic001G169500--Sobic003G432700 Sobic006G249300 Sobic006G249300 Sobic001G169500--Sobic006G249300 Sobic005G107900 Sobic005G107900 Sobic001G169500--Sobic005G107900 Sobic002G068600 Sobic002G068600 Sobic001G169500--Sobic002G068600 Sobic007G008100--Sobic002G042000 Sobic001G054500 Sobic001G054500 Sobic007G008100--Sobic001G054500 Sobic007G008100--Sobic004G336500 Sobic003G364300 Sobic003G364300 Sobic007G008100--Sobic003G364300 Sobic007G008000 Sobic007G008000 Sobic007G008100--Sobic007G008000 Sobic007G008100--Sobic009G069800 Sobic009G154200 Sobic009G154200 Sobic007G008100--Sobic009G154200 Sobic008G139600 Sobic008G139600 Sobic007G008100--Sobic008G139600 Sobic002G040900 Sobic002G040900 Sobic007G008100--Sobic002G040900 Sobic009G184000 Sobic009G184000 Sobic001G112200--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic001G112200--Sobic003G369100 Sobic007G169700 Sobic007G169700 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G310600 Sobic001G310600 Sobic001G112200--Sobic001G310600 Sobic010G225251--Sobic001G112200 Sobic010G225251--Sobic004G336500 Sobic010G225251--Sobic001G310600 Sobic010G225251--Sobic009G069800 Sobic010G225251--Sobic001G138600 Sobic010G225251--Sobic009G184000 Sobic002G389400 Sobic002G389400 Sobic010G225251--Sobic002G389400 Sobic004G109900 Sobic004G109900 Sobic010G225251--Sobic004G109900 Sobic010G225251--Sobic007G169700 Sobic003G382800--Sobic001G138600 Sobic004G141200 Sobic004G141200 Sobic003G382800--Sobic004G141200 Sobic003G382800--Sobic001G169500 Sobic001G108200 Sobic001G108200 Sobic003G382800--Sobic001G108200 Sobic003G394400 Sobic003G394400 Sobic003G382800--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic003G382800--Sobic004G166200 Sobic003G382800--Sobic002G068600 Sobic003G382800--Sobic003G086600 Sobic003G148600 Sobic003G148600 Sobic003G382800--Sobic003G148600 Sobic010G198600 Sobic010G198600 Sobic001G280800--Sobic010G198600 Sobic001G280800--Sobic004G336500 Sobic001G279300 Sobic001G279300 Sobic001G280800--Sobic001G279300 Sobic001G280800--Sobic009G069800 Sobic004G004400 Sobic004G004400 Sobic001G280800--Sobic004G004400 Sobic001G280800--Sobic010G225251 Sobic001G280800--Sobic009G145700 Sobic008G066401 Sobic008G066401 Sobic001G280800--Sobic008G066401 Sobic001G280800--Sobic004G109900 Sobic001G138600--Sobic003G382800 Sobic001G138600--Sobic001G112200 Sobic001G138600--Sobic004G141200 Sobic001G138600--Sobic003G369100 Sobic001G138600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G138600--Sobic001G079300 Sobic001G138600--Sobic007G074000 Sobic001G459800 Sobic001G459800 Sobic001G138600--Sobic001G459800 Sobic001G391500 Sobic001G391500 Sobic001G138600--Sobic001G391500
Octagon: transcription factors


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