Gene annotation
Transcriptome id Sobic.002G389400.1
Synonym RCI2B
Functional annotation OsRCI2-10 - Hydrophobic protein LTI6A, expressed
UniProt A0A1B6QFS1
Pfam PF01679
Panther DB PTHR21659:SF26 PTHR21659
NCBI CDD KOG1773; Stress responsive protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G05890 : Low temperature and salt responsive protein family
RAP-DB (Rice) LOC_Os07g44180.1 : OsRCI2-10 - Hydrophobic protein LTI6A, expressed
MaizeGDB (Corn) Zm00025a052306
Brachypodium KQK15031
Barley HORVU2Hr1G027430.2 , HORVU2Hr1G027430.3 , HORVU2Hr1G027430.1 , HORVU1Hr1G017700.1 , HORVU1Hr1G017700.2 , HORVU1Hr1G017700.3
Wheat TraesCS7A02G359400 , TraesCS2D02G157100 , TraesCS1D02G083900 , TraesCS2A02G152000 , TraesCS1D02G398000 , TraesCS1A02G082500 , TraesCS2B02G177100 , TraesCS1A02G082500 , TraesCS7A02G287300 , TraesCS1B02G100100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
3 Sobic.004G171400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
5 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
6 Sobic.010G225251 - -
7 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
8 Sobic.010G166500 amino acid transporter, putative, expressed -
9 Sobic.001G138600 VQ domain containing protein, putative, expressed -
10 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
11 Sobic.004G109900 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
13 Sobic.003G084400 ZOS1-03 - C2H2 zinc finger protein, expressed -
14 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.001G477600 zinc finger protein, putative, expressed -
17 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
18 Sobic.006G137800 expressed protein -
19 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
20 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G389400 Sobic002G389400 Sobic001G112200 Sobic001G112200 Sobic002G389400--Sobic001G112200 Sobic009G184000 Sobic009G184000 Sobic002G389400--Sobic009G184000 Sobic004G171400 Sobic004G171400 Sobic002G389400--Sobic004G171400 Sobic003G367200 Sobic003G367200 Sobic002G389400--Sobic003G367200 Sobic004G321300 Sobic004G321300 Sobic002G389400--Sobic004G321300 Sobic010G225251 Sobic010G225251 Sobic002G389400--Sobic010G225251 Sobic004G336500 Sobic004G336500 Sobic002G389400--Sobic004G336500 Sobic010G166500 Sobic010G166500 Sobic002G389400--Sobic010G166500 Sobic001G138600 Sobic001G138600 Sobic002G389400--Sobic001G138600 Sobic001G112200--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic001G112200--Sobic003G369100 Sobic007G169700 Sobic007G169700 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G310600 Sobic001G310600 Sobic001G112200--Sobic001G310600 Sobic009G184000--Sobic001G112200 Sobic009G184000--Sobic007G169700 Sobic006G235100 Sobic006G235100 Sobic009G184000--Sobic006G235100 Sobic001G502400 Sobic001G502400 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic003G432700 Sobic003G432700 Sobic009G184000--Sobic003G432700 Sobic009G184000--Sobic001G138600 Sobic008G066401 Sobic008G066401 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic005G011300 Sobic005G011300 Sobic004G171400--Sobic005G011300 Sobic003G393900 Sobic003G393900 Sobic004G171400--Sobic003G393900 Sobic004G141200 Sobic004G141200 Sobic004G171400--Sobic004G141200 Sobic001G140900 Sobic001G140900 Sobic004G171400--Sobic001G140900 Sobic004G100700 Sobic004G100700 Sobic004G171400--Sobic004G100700 Sobic004G171400--Sobic003G228900 Sobic001G459800 Sobic001G459800 Sobic004G171400--Sobic001G459800 Sobic002G188900 Sobic002G188900 Sobic004G171400--Sobic002G188900 Sobic004G171400--Sobic003G369100 Sobic003G367200--Sobic004G336500 Sobic006G275200 Sobic006G275200 Sobic003G367200--Sobic006G275200 Sobic003G086600 Sobic003G086600 Sobic003G367200--Sobic003G086600 Sobic003G382800 Sobic003G382800 Sobic003G367200--Sobic003G382800 Sobic001G397200 Sobic001G397200 Sobic003G367200--Sobic001G397200 Sobic004G280200 Sobic004G280200 Sobic003G367200--Sobic004G280200 Sobic007G015600 Sobic007G015600 Sobic003G367200--Sobic007G015600 Sobic003G367200--Sobic001G140900 Sobic003G367200--Sobic003G369100 Sobic004G321300--Sobic004G237800 Sobic009G159400 Sobic009G159400 Sobic004G321300--Sobic009G159400 Sobic008G136400 Sobic008G136400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic001G038900 Sobic001G038900 Sobic004G321300--Sobic001G038900 Sobic002G055700 Sobic002G055700 Sobic004G321300--Sobic002G055700 Sobic004G321300--Sobic001G140900 Sobic005G091500 Sobic005G091500 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic010G225251--Sobic001G112200 Sobic010G225251--Sobic004G336500 Sobic010G225251--Sobic001G310600 Sobic009G069800 Sobic009G069800 Sobic010G225251--Sobic009G069800 Sobic010G225251--Sobic001G138600 Sobic010G225251--Sobic009G184000 Sobic010G225251--Sobic002G389400 Sobic004G109900 Sobic004G109900 Sobic010G225251--Sobic004G109900 Sobic010G225251--Sobic007G169700 Sobic004G336500--Sobic009G069800 Sobic004G336500--Sobic003G367200 Sobic001G169500 Sobic001G169500 Sobic004G336500--Sobic001G169500 Sobic007G008100 Sobic007G008100 Sobic004G336500--Sobic007G008100 Sobic004G336500--Sobic001G112200 Sobic004G336500--Sobic010G225251 Sobic004G336500--Sobic003G382800 Sobic001G280800 Sobic001G280800 Sobic004G336500--Sobic001G280800 Sobic004G336500--Sobic001G138600 Sobic010G166500--Sobic002G389400 Sobic010G166500--Sobic001G112200 Sobic010G166500--Sobic009G069800 Sobic002G302500 Sobic002G302500 Sobic010G166500--Sobic002G302500 Sobic010G166500--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic010G166500--Sobic010G274900 Sobic003G364300 Sobic003G364300 Sobic010G166500--Sobic003G364300 Sobic010G156500 Sobic010G156500 Sobic010G166500--Sobic010G156500 Sobic001G477600 Sobic001G477600 Sobic010G166500--Sobic001G477600 Sobic001G138600--Sobic003G382800 Sobic001G138600--Sobic001G112200 Sobic001G138600--Sobic004G141200 Sobic001G138600--Sobic003G369100 Sobic001G138600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G138600--Sobic001G079300 Sobic001G138600--Sobic007G074000 Sobic001G138600--Sobic001G459800 Sobic001G391500 Sobic001G391500 Sobic001G138600--Sobic001G391500
Octagon: transcription factors


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