Gene annotation
| Transcriptome id | Sobic.006G137800.1 |
|---|---|
| Synonym | Sb06g021720 |
| Functional annotation | expressed protein |
| UniProt | C5YBJ6 |
| Pfam | PF06364 |
| Panther DB | PTHR32254 PTHR32254:SF4 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G24290 : Protein of unknown function (DUF1068) |
|---|---|
| RAP-DB (Rice) | LOC_Os04g42340.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a056416 |
| Brachypodium | KQK10914 , KQK10915 , PNT73325 , KQJ83410 |
| Barley | HORVU2Hr1G086810.9 , HORVU2Hr1G086810.8 , HORVU2Hr1G086810.1 , HORVU2Hr1G086810.3 , HORVU2Hr1G086810.2 , HORVU2Hr1G086810.5 , HORVU2Hr1G086810.4 , HORVU2Hr1G086810.7 , HORVU2Hr1G086810.6 |
| Wheat | TraesCS2B02G375800 , TraesCS2D02G355400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G159400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed | - |
| 2 | Sobic.008G025600 | cyclin-dependent kinase B1-1, putative, expressed | K07760: cyclin-dependent kinase |
| 3 | Sobic.004G321300 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 4 | Sobic.001G140900 | helix-loop-helix DNA-binding protein, putative, expressed | - |
| 5 | Sobic.002G200600 | 60S ribosomal protein L34, putative, expressed | K02915: RP-L34e, large subunit ribosomal protein L34e |
| 6 | Sobic.001G038900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed | - |
| 7 | Sobic.008G050600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed | - |
| 8 | Sobic.006G159600 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
| 9 | Sobic.003G345100 | flavonol synthase/flavanone 3-hydroxylase, putative, expressed | - |
| 10 | Sobic.002G389400 | OsRCI2-10 - Hydrophobic protein LTI6A, expressed | - |
| 11 | Sobic.007G184600 | 60S ribosomal protein L38, putative, expressed | K02923: RP-L38e, large subunit ribosomal protein L38e |
| 12 | Sobic.001G435000 | gibberellin receptor GID1L2, putative, expressed | - |
| 13 | Sobic.007G197800 | 60S ribosomal protein L32, putative, expressed | K02912: RP-L32e, large subunit ribosomal protein L32e |
| 14 | Sobic.004G171400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 15 | Sobic.001G070800 | expressed protein | - |
| 16 | Sobic.001G402050 | - | K02979: RP-S28e, small subunit ribosomal protein S28e |
| 17 | Sobic.003G125650 | - | K02183: calmodulin |
| 18 | Sobic.004G205100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase |
| 19 | Sobic.003G357300 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 20 | Sobic.005G063100 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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