Gene annotation
| Transcriptome id | Sobic.006G159600.2,Sobic.006G159600.1 |
|---|---|
| Synonym | ACYB-2, Sb06g023650 |
| Functional annotation | cytochrome b561, putative, expressed |
| UniProt | A0A1B6PM86 , A0A1B6PM85 |
| Pfam | PF03188 |
| Panther DB | PTHR10106 PTHR10106:SF17 |
| NCBI CDD | KOG1619; Cytochrome b |
| KEGG Orthology | K08360; cytochrome b-561 |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT4G25570 : Cytochrome b561/ferric reductase transmembrane protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os02g42890.1 : cytochrome b561, putative, expressed |
| MaizeGDB (Corn) | Zm00025a032133 , Zm00025a010440 |
| Brachypodium | PNT61558 , KQK00515 , KQK00514 , KQJ83764 |
| Barley | HORVU2Hr1G091720.2 , HORVU2Hr1G091720.1 |
| Wheat | TraesCS2B02G386700 , TraesCS2A02G369700 , TraesCS2D02G366100 , TraesCS1B02G189800 |
| Populus | - |
JBrowse
| Sobic.006G159600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G137800 | expressed protein | - |
| 2 | Sobic.002G348100 | 40S ribosomal protein S13, putative, expressed | K02953: RP-S13e, small subunit ribosomal protein S13e |
| 3 | Sobic.003G125650 | - | K02183: calmodulin |
| 4 | Sobic.006G067800 | 60S acidic ribosomal protein, putative, expressed | K02943: RP-LP2, large subunit ribosomal protein LP2 |
| 5 | Sobic.004G321300 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 6 | Sobic.008G025600 | cyclin-dependent kinase B1-1, putative, expressed | K07760: cyclin-dependent kinase |
| 7 | Sobic.007G197800 | 60S ribosomal protein L32, putative, expressed | K02912: RP-L32e, large subunit ribosomal protein L32e |
| 8 | Sobic.009G159400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed | - |
| 9 | Sobic.001G464900 | "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 10 | Sobic.009G242300 | 60S acidic ribosomal protein, putative, expressed | K02943: RP-LP2, large subunit ribosomal protein LP2 |
| 11 | Sobic.003G072300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 12 | Sobic.003G078200 | ribosomal protein L24, putative, expressed | K02898: RP-L26e, large subunit ribosomal protein L26e |
| 13 | Sobic.002G200600 | 60S ribosomal protein L34, putative, expressed | K02915: RP-L34e, large subunit ribosomal protein L34e |
| 14 | Sobic.001G403500 | 40S ribosomal protein S7, putative, expressed | K02993: RP-S7e, small subunit ribosomal protein S7e |
| 15 | Sobic.003G088400 | Up-reguralion under drought(PubMedID : 24916767)@BBTI11 - Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed | - |
| 16 | Sobic.002G372400 | 60S ribosomal protein, putative, expressed | K02900: RP-L27Ae, large subunit ribosomal protein L27Ae |
| 17 | Sobic.001G402050 | - | K02979: RP-S28e, small subunit ribosomal protein S28e |
| 18 | Sobic.004G205100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase |
| 19 | Sobic.003G037800 | transferase family protein, putative, expressed | - |
| 20 | Sobic.002G379500 | 40S ribosomal protein S6, putative, expressed | K02991: RP-S6e, small subunit ribosomal protein S6e |
Gene co-expression network
Octagon: transcription factors
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