Gene annotation
Transcriptome id Sobic.003G125650.1
Synonym -
Functional annotation -
UniProt -
Pfam PF13499
Panther DB PTHR23050 PTHR23050:SF166
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K02183; calmodulin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27030 : calmodulin 5
RAP-DB (Rice) LOC_Os07g48780.1 : OsCam1-2 - Calmodulin, expressed
MaizeGDB (Corn) Zm00025a002229 , Zm00025a052528 , Zm00025a044073 , Zm00025a035250 , Zm00025a015474 , Zm00025a027145 , Zm00025a024000 , Zm00025a037833
Brachypodium KQJ92429 , KQK05657 , PNT70357 , KQK03947 , PNT70323 , PNT70324 , PNT77520 , PNT74543 , PNT74544
Barley HORVU4Hr1G052210.4 , HORVU4Hr1G052210.5 , HORVU4Hr1G052210.6 , HORVU4Hr1G052210.1 , HORVU4Hr1G052210.2 , HORVU4Hr1G052210.3 , HORVU2Hr1G016740.4 , HORVU2Hr1G016740.5 , HORVU2Hr1G016740.6 , HORVU2Hr1G016740.1 , HORVU2Hr1G016740.3 , HORVU3Hr1G040040.1 , HORVU0Hr1G001270.2 , HORVU0Hr1G001270.3 , HORVU0Hr1G001270.1 , HORVU0Hr1G001270.4 , HORVU3Hr1G038010.5 , HORVU3Hr1G038010.4 , HORVU3Hr1G038010.7 , HORVU3Hr1G038010.1 , HORVU3Hr1G038010.3 , HORVU3Hr1G038010.2 , HORVU3Hr1G038010.8 , HORVU1Hr1G068420.1 , HORVU3Hr1G079210.4 , HORVU3Hr1G079210.7 , HORVU3Hr1G079210.8 , HORVU3Hr1G079210.9
Wheat TraesCS3A02G184500 , TraesCS3A02G335000 , TraesCS3B02G219900 , TraesCS3B02G219900 , TraesCS3D02G194500 , TraesCS4B02G178200 , TraesCS2A02G098100 , TraesCS3D02G188600 , TraesCS3A02G191900 , TraesCS3B02G214400 , TraesCS1D02G308100 , TraesCS2D02G097500 , TraesCS1B02G319400 , TraesCS1B02G319400 , TraesCS2B02G113800 , TraesCS2B02G113800 , TraesCS4A02G126700 , TraesCS3B02G365900 , TraesCS3B02G365900 , TraesCS3B02G365900 , TraesCS3D02G328300 , TraesCS4D02G179800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
2 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
3 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
4 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
5 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
6 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
7 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
8 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
9 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
10 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
11 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
12 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
13 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
14 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
15 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
16 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
17 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
18 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
19 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
20 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e


Gene co-expression network
sample Sobic003G125650 Sobic003G125650 Sobic007G197800 Sobic007G197800 Sobic003G125650--Sobic007G197800 Sobic001G130301 Sobic001G130301 Sobic003G125650--Sobic001G130301 Sobic001G018900 Sobic001G018900 Sobic003G125650--Sobic001G018900 Sobic001G402050 Sobic001G402050 Sobic003G125650--Sobic001G402050 Sobic001G390300 Sobic001G390300 Sobic003G125650--Sobic001G390300 Sobic006G116700 Sobic006G116700 Sobic003G125650--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic003G125650--Sobic001G493001 Sobic002G200600 Sobic002G200600 Sobic003G125650--Sobic002G200600 Sobic009G050300 Sobic009G050300 Sobic003G125650--Sobic009G050300 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic009G215200 Sobic009G215200 Sobic007G197800--Sobic009G215200 Sobic007G197800--Sobic001G402050 Sobic001G016400 Sobic001G016400 Sobic007G197800--Sobic001G016400 Sobic001G403500 Sobic001G403500 Sobic007G197800--Sobic001G403500 Sobic004G008400 Sobic004G008400 Sobic007G197800--Sobic004G008400 Sobic001G130301--Sobic009G215200 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G130301--Sobic001G018900 Sobic001G130301--Sobic001G493001 Sobic001G130301--Sobic001G402050 Sobic001G130301--Sobic009G050300 Sobic001G130301--Sobic002G200600 Sobic001G374700 Sobic001G374700 Sobic001G130301--Sobic001G374700 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G018900--Sobic001G130301 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic001G402050--Sobic002G200600 Sobic001G402050--Sobic001G374700 Sobic007G184600 Sobic007G184600 Sobic001G402050--Sobic007G184600 Sobic001G402050--Sobic007G197800 Sobic006G067800 Sobic006G067800 Sobic001G402050--Sobic006G067800 Sobic001G402050--Sobic001G016400 Sobic001G402050--Sobic009G215200 Sobic001G402050--Sobic001G130301 Sobic001G402050--Sobic001G493001 Sobic001G390300--Sobic003G125650 Sobic001G046100 Sobic001G046100 Sobic001G390300--Sobic001G046100 Sobic001G055600 Sobic001G055600 Sobic001G390300--Sobic001G055600 Sobic001G390300--Sobic001G402050 Sobic001G390300--Sobic001G374700 Sobic001G390300--Sobic001G493001 Sobic005G196800 Sobic005G196800 Sobic001G390300--Sobic005G196800 Sobic001G390300--Sobic002G375100 Sobic001G367600 Sobic001G367600 Sobic001G390300--Sobic001G367600 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic002G081600 Sobic002G081600 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic006G116700--Sobic002G200600 Sobic006G116700--Sobic001G036900 Sobic001G493001--Sobic001G130301 Sobic001G493001--Sobic001G374700 Sobic006G047400 Sobic006G047400 Sobic001G493001--Sobic006G047400 Sobic001G493001--Sobic007G184600 Sobic001G493001--Sobic001G402050 Sobic001G493001--Sobic009G050300 Sobic001G493001--Sobic001G018900 Sobic001G493001--Sobic002G081600 Sobic001G493001--Sobic002G200600 Sobic002G200600--Sobic007G184600 Sobic002G200600--Sobic001G402050 Sobic002G200600--Sobic006G067800 Sobic002G200600--Sobic006G116700 Sobic002G200600--Sobic002G081600 Sobic002G200600--Sobic007G197800 Sobic002G200600--Sobic001G374700 Sobic002G200600--Sobic001G018900 Sobic002G200600--Sobic001G130301 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500
Octagon: transcription factors


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