Gene annotation
Transcriptome id Sobic.001G390300.1
Synonym Sb01g037010, ACAM-2, CAM5
Functional annotation OsCam1-1 - Calmodulin, expressed
UniProt C5X1U2 , C6JSN5
Pfam PF13499
Panther DB PTHR23050 PTHR23050:SF166
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K02183; calmodulin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27030 : calmodulin 5
RAP-DB (Rice) LOC_Os03g20370.1 : OsCam1-1 - Calmodulin, expressed
MaizeGDB (Corn) Zm00025a002229 , Zm00025a052528 , Zm00025a044073 , Zm00025a035250 , Zm00025a015474 , Zm00025a024000 , Zm00025a037833
Brachypodium KQJ92429 , KQK10249 , KQK10250 , KQK05657 , PNT70357 , KQK03947 , PNT70323 , PNT70324 , PNT77520 , PNT74543 , PNT74544
Barley HORVU4Hr1G052210.2 , HORVU4Hr1G052210.3 , HORVU2Hr1G016740.4 , HORVU2Hr1G016740.5 , HORVU2Hr1G016740.6 , HORVU2Hr1G016740.1 , HORVU2Hr1G016740.3 , HORVU3Hr1G040040.1 , HORVU0Hr1G001270.2 , HORVU0Hr1G001270.3 , HORVU0Hr1G001270.1 , HORVU0Hr1G001270.4 , HORVU3Hr1G038010.5 , HORVU3Hr1G038010.4 , HORVU3Hr1G038010.7 , HORVU3Hr1G038010.1 , HORVU3Hr1G038010.3 , HORVU3Hr1G038010.2 , HORVU3Hr1G038010.8 , HORVU1Hr1G068420.1 , HORVU3Hr1G079210.4 , HORVU3Hr1G079210.7 , HORVU3Hr1G079210.8 , HORVU3Hr1G079210.9
Wheat TraesCS3A02G184500 , TraesCS3A02G335000 , TraesCS3B02G219900 , TraesCS3B02G219900 , TraesCS3D02G194500 , TraesCS4B02G178200 , TraesCS2A02G098100 , TraesCS3D02G188600 , TraesCS3A02G191900 , TraesCS3B02G214400 , TraesCS1D02G308100 , TraesCS2D02G097500 , TraesCS1B02G319400 , TraesCS2B02G113800 , TraesCS2B02G113800 , TraesCS4A02G126700 , TraesCS3B02G365900 , TraesCS3B02G365900 , TraesCS3B02G365900 , TraesCS3D02G328300 , TraesCS4D02G179800
Populus PNT55996 , PNT55997 , PNT55995 , PNT55998 , PNT55999 , PNT19123 , PNT19124


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cDNA sequences
Sobic.001G390300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G125650 - K02183: calmodulin
2 Sobic.001G046100 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
3 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
4 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
5 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
6 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
7 Sobic.005G196800 membrane protein, putative, expressed -
8 Sobic.002G375100 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
9 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.010G012500 ATOZI1, putative, expressed -
11 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
12 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
13 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
14 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
15 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
16 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
17 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
18 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
19 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
20 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e


Gene co-expression network
sample Sobic001G390300 Sobic001G390300 Sobic003G125650 Sobic003G125650 Sobic001G390300--Sobic003G125650 Sobic001G046100 Sobic001G046100 Sobic001G390300--Sobic001G046100 Sobic001G055600 Sobic001G055600 Sobic001G390300--Sobic001G055600 Sobic001G402050 Sobic001G402050 Sobic001G390300--Sobic001G402050 Sobic001G374700 Sobic001G374700 Sobic001G390300--Sobic001G374700 Sobic001G493001 Sobic001G493001 Sobic001G390300--Sobic001G493001 Sobic005G196800 Sobic005G196800 Sobic001G390300--Sobic005G196800 Sobic002G375100 Sobic002G375100 Sobic001G390300--Sobic002G375100 Sobic001G367600 Sobic001G367600 Sobic001G390300--Sobic001G367600 Sobic007G197800 Sobic007G197800 Sobic003G125650--Sobic007G197800 Sobic001G130301 Sobic001G130301 Sobic003G125650--Sobic001G130301 Sobic001G018900 Sobic001G018900 Sobic003G125650--Sobic001G018900 Sobic003G125650--Sobic001G402050 Sobic003G125650--Sobic001G390300 Sobic006G116700 Sobic006G116700 Sobic003G125650--Sobic006G116700 Sobic003G125650--Sobic001G493001 Sobic002G200600 Sobic002G200600 Sobic003G125650--Sobic002G200600 Sobic009G050300 Sobic009G050300 Sobic003G125650--Sobic009G050300 Sobic001G046100--Sobic001G374700 Sobic001G046100--Sobic001G390300 Sobic001G046100--Sobic001G402050 Sobic002G175100 Sobic002G175100 Sobic001G046100--Sobic002G175100 Sobic003G322400 Sobic003G322400 Sobic001G046100--Sobic003G322400 Sobic006G047400 Sobic006G047400 Sobic001G046100--Sobic006G047400 Sobic001G046100--Sobic007G197800 Sobic001G177800 Sobic001G177800 Sobic001G046100--Sobic001G177800 Sobic001G091801 Sobic001G091801 Sobic001G046100--Sobic001G091801 Sobic001G055600--Sobic001G390300 Sobic007G074000 Sobic007G074000 Sobic001G055600--Sobic007G074000 Sobic002G407900 Sobic002G407900 Sobic001G055600--Sobic002G407900 Sobic009G159400 Sobic009G159400 Sobic001G055600--Sobic009G159400 Sobic001G481100 Sobic001G481100 Sobic001G055600--Sobic001G481100 Sobic004G065500 Sobic004G065500 Sobic001G055600--Sobic004G065500 Sobic002G336600 Sobic002G336600 Sobic001G055600--Sobic002G336600 Sobic003G228900 Sobic003G228900 Sobic001G055600--Sobic003G228900 Sobic009G247900 Sobic009G247900 Sobic001G055600--Sobic009G247900 Sobic001G402050--Sobic002G200600 Sobic001G402050--Sobic001G374700 Sobic007G184600 Sobic007G184600 Sobic001G402050--Sobic007G184600 Sobic001G402050--Sobic007G197800 Sobic006G067800 Sobic006G067800 Sobic001G402050--Sobic006G067800 Sobic001G016400 Sobic001G016400 Sobic001G402050--Sobic001G016400 Sobic009G215200 Sobic009G215200 Sobic001G402050--Sobic009G215200 Sobic001G402050--Sobic001G130301 Sobic001G402050--Sobic001G493001 Sobic001G374700--Sobic002G175100 Sobic001G374700--Sobic007G184600 Sobic001G374700--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic001G374700--Sobic002G081600 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G374700--Sobic001G493001 Sobic001G493001--Sobic001G130301 Sobic001G493001--Sobic001G374700 Sobic001G493001--Sobic006G047400 Sobic001G493001--Sobic007G184600 Sobic001G493001--Sobic001G402050 Sobic001G493001--Sobic009G050300 Sobic001G493001--Sobic001G018900 Sobic001G493001--Sobic002G081600 Sobic001G493001--Sobic002G200600 Sobic001G247300 Sobic001G247300 Sobic005G196800--Sobic001G247300 Sobic004G237800 Sobic004G237800 Sobic005G196800--Sobic004G237800 Sobic005G196800--Sobic001G390300 Sobic002G338500 Sobic002G338500 Sobic005G196800--Sobic002G338500 Sobic004G321300 Sobic004G321300 Sobic005G196800--Sobic004G321300 Sobic006G183400 Sobic006G183400 Sobic005G196800--Sobic006G183400 Sobic003G382600 Sobic003G382600 Sobic005G196800--Sobic003G382600 Sobic003G043600 Sobic003G043600 Sobic005G196800--Sobic003G043600 Sobic002G055700 Sobic002G055700 Sobic005G196800--Sobic002G055700 Sobic002G375100--Sobic001G018900 Sobic002G375100--Sobic006G116700 Sobic002G375100--Sobic001G374700 Sobic003G408100 Sobic003G408100 Sobic002G375100--Sobic003G408100 Sobic001G036900 Sobic001G036900 Sobic002G375100--Sobic001G036900 Sobic002G375100--Sobic009G215200 Sobic002G375100--Sobic001G016400 Sobic002G375100--Sobic007G197800 Sobic002G375100--Sobic009G050300 Sobic002G192000 Sobic002G192000 Sobic001G367600--Sobic002G192000 Sobic001G140900 Sobic001G140900 Sobic001G367600--Sobic001G140900 Sobic001G038900 Sobic001G038900 Sobic001G367600--Sobic001G038900 Sobic001G231700 Sobic001G231700 Sobic001G367600--Sobic001G231700 Sobic002G017800 Sobic002G017800 Sobic001G367600--Sobic002G017800 Sobic004G100700 Sobic004G100700 Sobic001G367600--Sobic004G100700 Sobic006G103000 Sobic006G103000 Sobic001G367600--Sobic006G103000 Sobic001G367600--Sobic002G055700 Sobic002G353900 Sobic002G353900 Sobic001G367600--Sobic002G353900
Octagon: transcription factors


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