Gene annotation
Transcriptome id Sobic.001G046100.1
Synonym Sb01g004250
Functional annotation ribosomal protein, putative, expressed
UniProt C5WW47
Pfam PF00333 PF03719
Panther DB PTHR13718:SF69 PTHR13718
NCBI CDD KOG0877; 40S ribosomal protein S2/30S ribosomal protein S5
KEGG Orthology K02981; RP-S2e, small subunit ribosomal protein S2e
Gene Ontology GO:0003723; RNA binding GO:0003735structural constituent of ribosome GO:0005840ribosome GO:0006412translation


Orthologs (automatic annotation)
TAIR AT3G57490 : Ribosomal protein S5 family protein
RAP-DB (Rice) LOC_Os03g59310.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a045372 , Zm00025a016506 , Zm00025a008670
Brachypodium KQK20398 , KQK12579
Barley HORVU3Hr1G086050.4 , HORVU3Hr1G086050.1 , HORVU3Hr1G086050.2 , HORVU3Hr1G086050.3 , HORVU5Hr1G109910.5 , HORVU5Hr1G109910.4 , HORVU5Hr1G109910.3 , HORVU5Hr1G109910.2
Wheat TraesCS3D02G338200 , TraesCS5B02G468500 , TraesCS5A02G458900 , TraesCS3A02G366100 , TraesCS5D02G470000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G046100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
2 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
3 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
4 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
5 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
6 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
7 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
8 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
9 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
10 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
11 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
12 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
13 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
14 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
15 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
16 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
17 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
18 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
19 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
20 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e


Gene co-expression network
sample Sobic001G046100 Sobic001G046100 Sobic001G374700 Sobic001G374700 Sobic001G046100--Sobic001G374700 Sobic001G390300 Sobic001G390300 Sobic001G046100--Sobic001G390300 Sobic001G402050 Sobic001G402050 Sobic001G046100--Sobic001G402050 Sobic002G175100 Sobic002G175100 Sobic001G046100--Sobic002G175100 Sobic003G322400 Sobic003G322400 Sobic001G046100--Sobic003G322400 Sobic006G047400 Sobic006G047400 Sobic001G046100--Sobic006G047400 Sobic007G197800 Sobic007G197800 Sobic001G046100--Sobic007G197800 Sobic001G177800 Sobic001G177800 Sobic001G046100--Sobic001G177800 Sobic001G091801 Sobic001G091801 Sobic001G046100--Sobic001G091801 Sobic001G374700--Sobic002G175100 Sobic007G184600 Sobic007G184600 Sobic001G374700--Sobic007G184600 Sobic001G374700--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic001G374700--Sobic002G081600 Sobic001G374700--Sobic006G047400 Sobic009G215200 Sobic009G215200 Sobic001G374700--Sobic009G215200 Sobic002G200600 Sobic002G200600 Sobic001G374700--Sobic002G200600 Sobic006G116700 Sobic006G116700 Sobic001G374700--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic001G374700--Sobic001G493001 Sobic003G125650 Sobic003G125650 Sobic001G390300--Sobic003G125650 Sobic001G390300--Sobic001G046100 Sobic001G055600 Sobic001G055600 Sobic001G390300--Sobic001G055600 Sobic001G390300--Sobic001G402050 Sobic001G390300--Sobic001G374700 Sobic001G390300--Sobic001G493001 Sobic005G196800 Sobic005G196800 Sobic001G390300--Sobic005G196800 Sobic002G375100 Sobic002G375100 Sobic001G390300--Sobic002G375100 Sobic001G367600 Sobic001G367600 Sobic001G390300--Sobic001G367600 Sobic001G402050--Sobic002G200600 Sobic001G402050--Sobic001G374700 Sobic001G402050--Sobic007G184600 Sobic001G402050--Sobic007G197800 Sobic006G067800 Sobic006G067800 Sobic001G402050--Sobic006G067800 Sobic001G016400 Sobic001G016400 Sobic001G402050--Sobic001G016400 Sobic001G402050--Sobic009G215200 Sobic001G130301 Sobic001G130301 Sobic001G402050--Sobic001G130301 Sobic001G402050--Sobic001G493001 Sobic004G331400 Sobic004G331400 Sobic002G175100--Sobic004G331400 Sobic002G175100--Sobic001G374700 Sobic002G175100--Sobic009G215200 Sobic002G175100--Sobic006G116700 Sobic002G175100--Sobic001G091801 Sobic002G175100--Sobic006G047400 Sobic009G050300 Sobic009G050300 Sobic002G175100--Sobic009G050300 Sobic002G175100--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic002G175100--Sobic003G346600 Sobic003G322400--Sobic009G050300 Sobic003G322400--Sobic001G091801 Sobic007G212600 Sobic007G212600 Sobic003G322400--Sobic007G212600 Sobic003G322400--Sobic006G116700 Sobic001G054900 Sobic001G054900 Sobic003G322400--Sobic001G054900 Sobic003G408100 Sobic003G408100 Sobic003G322400--Sobic003G408100 Sobic003G322400--Sobic001G374700 Sobic003G322400--Sobic002G200600 Sobic003G322400--Sobic007G184600 Sobic009G166500 Sobic009G166500 Sobic006G047400--Sobic009G166500 Sobic006G047400--Sobic001G374700 Sobic009G163800 Sobic009G163800 Sobic006G047400--Sobic009G163800 Sobic006G047400--Sobic001G493001 Sobic006G047400--Sobic002G175100 Sobic006G047400--Sobic003G408100 Sobic006G047400--Sobic001G091801 Sobic006G047400--Sobic001G130301 Sobic006G047400--Sobic009G215200 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic001G018900 Sobic001G018900 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic001G403500 Sobic001G403500 Sobic007G197800--Sobic001G403500 Sobic004G008400 Sobic004G008400 Sobic007G197800--Sobic004G008400 Sobic001G177800--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic001G177800--Sobic009G139400 Sobic001G177800--Sobic001G374700 Sobic001G177800--Sobic001G402050 Sobic007G227300 Sobic007G227300 Sobic001G177800--Sobic007G227300 Sobic001G177800--Sobic002G200600 Sobic004G189400 Sobic004G189400 Sobic001G177800--Sobic004G189400 Sobic006G099900 Sobic006G099900 Sobic001G177800--Sobic006G099900 Sobic010G009300 Sobic010G009300 Sobic001G177800--Sobic010G009300 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic004G104100 Sobic004G104100 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic001G091801--Sobic002G175100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.