Gene annotation
Transcriptome id Sobic.006G047400.1
Synonym Sb06g012050
Functional annotation 60S ribosomal protein L37a, putative, expressed
UniProt C6JSB0 , C6JS09 , C5XVB4
Pfam PF01780
Panther DB -
NCBI CDD KOG0402; 60S ribosomal protein L37
KEGG Orthology K02921; RP-L37Ae, large subunit ribosomal protein L37Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G10950 : Zinc-binding ribosomal protein family protein
RAP-DB (Rice) LOC_Os05g48320.1 : 60S ribosomal protein L37a, putative, expressed
MaizeGDB (Corn) Zm00025a034869 , Zm00025a011810 , Zm00025a019019
Brachypodium KQK09189
Barley HORVU7Hr1G081910.4 , HORVU7Hr1G081910.5 , HORVU7Hr1G081910.1 , HORVU3Hr1G062590.3 , HORVU3Hr1G062590.2 , HORVU3Hr1G062590.1 , HORVU3Hr1G062590.4 , HORVU7Hr1G081910.2 , HORVU7Hr1G081910.3 , HORVU1Hr1G085170.1 , HORVU1Hr1G085170.2 , HORVU1Hr1G085170.3 , HORVU1Hr1G085170.5 , HORVU1Hr1G085170.6
Wheat TraesCS1B02G413700 , TraesCS7A02G331900 , TraesCS3D02G268000 , TraesCS1A02G386300 , TraesCS3A02G267900 , TraesCS3B02G302300 , TraesCS7D02G340100 , TraesCS7D02G340100 , TraesCS1D02G394700
Populus -


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cDNA sequences
Sobic.006G047400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
2 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
3 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
4 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
5 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
6 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
7 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
8 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
9 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
10 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
11 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
12 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
13 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
14 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
15 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
16 Sobic.009G105700 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
17 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
18 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
19 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
20 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e


Gene co-expression network
sample Sobic006G047400 Sobic006G047400 Sobic009G166500 Sobic009G166500 Sobic006G047400--Sobic009G166500 Sobic001G374700 Sobic001G374700 Sobic006G047400--Sobic001G374700 Sobic009G163800 Sobic009G163800 Sobic006G047400--Sobic009G163800 Sobic001G493001 Sobic001G493001 Sobic006G047400--Sobic001G493001 Sobic002G175100 Sobic002G175100 Sobic006G047400--Sobic002G175100 Sobic003G408100 Sobic003G408100 Sobic006G047400--Sobic003G408100 Sobic001G091801 Sobic001G091801 Sobic006G047400--Sobic001G091801 Sobic001G130301 Sobic001G130301 Sobic006G047400--Sobic001G130301 Sobic009G215200 Sobic009G215200 Sobic006G047400--Sobic009G215200 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic003G346600 Sobic003G346600 Sobic009G166500--Sobic003G346600 Sobic009G050300 Sobic009G050300 Sobic009G166500--Sobic009G050300 Sobic009G166500--Sobic001G091801 Sobic002G081600 Sobic002G081600 Sobic009G166500--Sobic002G081600 Sobic009G166500--Sobic001G374700 Sobic001G403500 Sobic001G403500 Sobic009G166500--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic009G166500--Sobic010G060500 Sobic001G374700--Sobic002G175100 Sobic007G184600 Sobic007G184600 Sobic001G374700--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic002G200600 Sobic002G200600 Sobic001G374700--Sobic002G200600 Sobic006G116700 Sobic006G116700 Sobic001G374700--Sobic006G116700 Sobic001G374700--Sobic001G493001 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic001G493001--Sobic001G130301 Sobic001G493001--Sobic001G374700 Sobic001G493001--Sobic006G047400 Sobic001G493001--Sobic007G184600 Sobic001G493001--Sobic001G402050 Sobic001G493001--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic001G493001--Sobic001G018900 Sobic001G493001--Sobic002G081600 Sobic001G493001--Sobic002G200600 Sobic002G175100--Sobic004G331400 Sobic002G175100--Sobic001G374700 Sobic002G175100--Sobic009G215200 Sobic002G175100--Sobic006G116700 Sobic002G175100--Sobic001G091801 Sobic002G175100--Sobic006G047400 Sobic002G175100--Sobic009G050300 Sobic002G175100--Sobic002G081600 Sobic002G175100--Sobic003G346600 Sobic001G054900 Sobic001G054900 Sobic003G408100--Sobic001G054900 Sobic003G152600 Sobic003G152600 Sobic003G408100--Sobic003G152600 Sobic003G408100--Sobic001G018900 Sobic003G408100--Sobic009G163800 Sobic003G408100--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic003G408100--Sobic010G206200 Sobic003G408100--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic003G408100--Sobic001G036900 Sobic003G408100--Sobic009G215200 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic004G104100 Sobic004G104100 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic001G091801--Sobic002G175100 Sobic001G130301--Sobic009G215200 Sobic007G197800 Sobic007G197800 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G130301--Sobic001G018900 Sobic001G130301--Sobic001G493001 Sobic001G130301--Sobic001G402050 Sobic001G130301--Sobic009G050300 Sobic001G130301--Sobic002G200600 Sobic001G130301--Sobic001G374700 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic001G016400 Sobic001G016400 Sobic009G215200--Sobic001G016400 Sobic009G215200--Sobic001G374700
Octagon: transcription factors


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