Gene annotation
Transcriptome id Sobic.002G175100.1
Synonym Sb02g022390
Functional annotation 60S ribosomal protein L44, putative, expressed
UniProt C5XAH7
Pfam PF00935
Panther DB PTHR10369 PTHR10369:SF3
NCBI CDD KOG3464; 60S ribosomal protein L44
KEGG Orthology K02929; RP-L44e, large subunit ribosomal protein L44e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G23390 : Zinc-binding ribosomal protein family protein
RAP-DB (Rice) LOC_Os07g33860.1 : 60S ribosomal protein L44, putative, expressed
MaizeGDB (Corn) Zm00025a045836 , Zm00025a048238 , Zm00025a014812
Brachypodium KQK16439 , KQK16438 , KQK15959 , KQK15960 , PNT75218 , PNT75217 , KQK16440
Barley HORVU2Hr1G045920.1 , HORVU2Hr1G045920.2 , HORVU2Hr1G045920.3 , HORVU7Hr1G104300.1 , HORVU7Hr1G104300.3 , HORVU7Hr1G104300.2 , HORVU5Hr1G101600.4 , HORVU5Hr1G081590.1 , HORVU5Hr1G101600.1 , HORVU5Hr1G101600.3 , HORVU5Hr1G101600.2
Wheat TraesCS7D02G443900 , TraesCS5A02G320100 , TraesCS5D02G326000 , TraesCS5D02G326000 , TraesCS5D02G425600 , TraesCS7A02G454700 , TraesCS4A02G182600 , TraesCS5A02G417600 , TraesCS2B02G246000 , TraesCS5B02G320300 , TraesCS5B02G419800 , TraesCS5B02G419800 , TraesCS7A02G454800
Populus PNT35766 , PNT35765 , PNT27573 , PNT27572


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cDNA sequences
Sobic.002G175100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
2 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
3 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
4 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
5 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
6 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
7 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
8 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
9 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
10 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
11 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
12 Sobic.009G105700 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
13 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
14 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
15 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
16 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
17 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
18 Sobic.002G375100 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
19 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
20 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e


Gene co-expression network
sample Sobic002G175100 Sobic002G175100 Sobic004G331400 Sobic004G331400 Sobic002G175100--Sobic004G331400 Sobic001G374700 Sobic001G374700 Sobic002G175100--Sobic001G374700 Sobic009G215200 Sobic009G215200 Sobic002G175100--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic002G175100--Sobic006G116700 Sobic001G091801 Sobic001G091801 Sobic002G175100--Sobic001G091801 Sobic006G047400 Sobic006G047400 Sobic002G175100--Sobic006G047400 Sobic009G050300 Sobic009G050300 Sobic002G175100--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic002G175100--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic002G175100--Sobic003G346600 Sobic004G331400--Sobic002G175100 Sobic001G376600 Sobic001G376600 Sobic004G331400--Sobic001G376600 Sobic009G163800 Sobic009G163800 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic003G408100 Sobic003G408100 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic004G331400--Sobic007G178600 Sobic004G331400--Sobic001G091801 Sobic001G374700--Sobic002G175100 Sobic007G184600 Sobic007G184600 Sobic001G374700--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic002G200600 Sobic002G200600 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic001G374700--Sobic001G493001 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic001G130301 Sobic001G130301 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic001G018900 Sobic001G018900 Sobic009G215200--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic009G215200--Sobic007G197800 Sobic001G403500 Sobic001G403500 Sobic009G215200--Sobic001G403500 Sobic001G016400 Sobic001G016400 Sobic009G215200--Sobic001G016400 Sobic009G215200--Sobic001G374700 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic004G008400 Sobic004G008400 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic004G104100 Sobic004G104100 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic009G166500 Sobic009G166500 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic001G091801--Sobic002G175100 Sobic006G047400--Sobic009G166500 Sobic006G047400--Sobic001G374700 Sobic006G047400--Sobic009G163800 Sobic006G047400--Sobic001G493001 Sobic006G047400--Sobic002G175100 Sobic006G047400--Sobic003G408100 Sobic006G047400--Sobic001G091801 Sobic006G047400--Sobic001G130301 Sobic006G047400--Sobic009G215200 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic002G081600--Sobic009G050300 Sobic002G081600--Sobic006G116700 Sobic002G081600--Sobic003G346600 Sobic002G081600--Sobic009G215200 Sobic002G081600--Sobic001G374700 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic002G081600--Sobic009G166500 Sobic002G081600--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic006G137100 Sobic006G137100 Sobic003G346600--Sobic006G137100
Octagon: transcription factors


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