Gene annotation
Transcriptome id Sobic.001G376600.1
Synonym Sb01g035740
Functional annotation 60S ribosomal protein L22-2, putative, expressed
UniProt C5X0P2
Pfam PF01776
Panther DB PTHR10064 PTHR10064:SF5
NCBI CDD KOG3434; 60S ribosomal protein L22
KEGG Orthology K02891; RP-L22e, large subunit ribosomal protein L22e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G05560 : Ribosomal L22e protein family
RAP-DB (Rice) LOC_Os03g22340.1 : 60S ribosomal protein L22-2, putative, expressed
MaizeGDB (Corn) Zm00025a015421 , Zm00025a052402 , Zm00025a049131
Brachypodium KQK21750 , KQK14678
Barley HORVU7Hr1G080630.2 , HORVU7Hr1G080630.1 , HORVU2Hr1G019160.1
Wheat TraesCS7D02G335000 , TraesCS7B02G238600 , TraesCS2A02G110500 , TraesCS2B02G129300 , TraesCS2D02G111100 , TraesCS7A02G344500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G376600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
2 Sobic.009G105700 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
3 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
4 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
5 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
6 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
7 Sobic.006G106100 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
8 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
9 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
10 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
11 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
12 Sobic.003G152600 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
13 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
14 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
15 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
16 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
17 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
18 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
19 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
20 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e


Gene co-expression network
sample Sobic001G376600 Sobic001G376600 Sobic004G331400 Sobic004G331400 Sobic001G376600--Sobic004G331400 Sobic009G105700 Sobic009G105700 Sobic001G376600--Sobic009G105700 Sobic010G206200 Sobic010G206200 Sobic001G376600--Sobic010G206200 Sobic001G091801 Sobic001G091801 Sobic001G376600--Sobic001G091801 Sobic002G175100 Sobic002G175100 Sobic001G376600--Sobic002G175100 Sobic009G050300 Sobic009G050300 Sobic001G376600--Sobic009G050300 Sobic006G106100 Sobic006G106100 Sobic001G376600--Sobic006G106100 Sobic005G019700 Sobic005G019700 Sobic001G376600--Sobic005G019700 Sobic006G221200 Sobic006G221200 Sobic001G376600--Sobic006G221200 Sobic004G331400--Sobic002G175100 Sobic004G331400--Sobic001G376600 Sobic009G163800 Sobic009G163800 Sobic004G331400--Sobic009G163800 Sobic004G331400--Sobic009G105700 Sobic003G408100 Sobic003G408100 Sobic004G331400--Sobic003G408100 Sobic003G346600 Sobic003G346600 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic004G331400--Sobic007G178600 Sobic004G331400--Sobic001G091801 Sobic009G105700--Sobic004G331400 Sobic009G105700--Sobic001G376600 Sobic009G105700--Sobic002G175100 Sobic006G047400 Sobic006G047400 Sobic009G105700--Sobic006G047400 Sobic003G322400 Sobic003G322400 Sobic009G105700--Sobic003G322400 Sobic009G105700--Sobic003G346600 Sobic001G493001 Sobic001G493001 Sobic009G105700--Sobic001G493001 Sobic009G105600 Sobic009G105600 Sobic009G105700--Sobic009G105600 Sobic010G063801 Sobic010G063801 Sobic009G105700--Sobic010G063801 Sobic010G206200--Sobic009G050300 Sobic009G054800 Sobic009G054800 Sobic010G206200--Sobic009G054800 Sobic001G054900 Sobic001G054900 Sobic010G206200--Sobic001G054900 Sobic010G251600 Sobic010G251600 Sobic010G206200--Sobic010G251600 Sobic009G215200 Sobic009G215200 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic010G206200--Sobic003G408100 Sobic003G078200 Sobic003G078200 Sobic010G206200--Sobic003G078200 Sobic007G019400 Sobic007G019400 Sobic010G206200--Sobic007G019400 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic004G104100 Sobic004G104100 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic009G166500 Sobic009G166500 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic001G091801--Sobic002G175100 Sobic002G175100--Sobic004G331400 Sobic001G374700 Sobic001G374700 Sobic002G175100--Sobic001G374700 Sobic002G175100--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic002G175100--Sobic006G116700 Sobic002G175100--Sobic001G091801 Sobic002G175100--Sobic006G047400 Sobic002G175100--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic002G175100--Sobic002G081600 Sobic002G175100--Sobic003G346600 Sobic009G050300--Sobic006G116700 Sobic004G008400 Sobic004G008400 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic006G106100--Sobic001G091801 Sobic006G106100--Sobic007G019400 Sobic006G106100--Sobic001G376600 Sobic006G106100--Sobic010G206200 Sobic006G106100--Sobic010G251600 Sobic004G280700 Sobic004G280700 Sobic006G106100--Sobic004G280700 Sobic006G106100--Sobic002G175100 Sobic006G106100--Sobic004G331400 Sobic006G106100--Sobic001G054900 Sobic010G230700 Sobic010G230700 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic007G018300 Sobic007G018300 Sobic005G019700--Sobic007G018300 Sobic005G019700--Sobic009G054800 Sobic005G019700--Sobic006G116700 Sobic005G019700--Sobic001G091801 Sobic005G019700--Sobic007G197800 Sobic005G019700--Sobic003G078200 Sobic005G019700--Sobic010G206200 Sobic006G221200--Sobic004G104100 Sobic010G166100 Sobic010G166100 Sobic006G221200--Sobic010G166100 Sobic006G221200--Sobic007G178600 Sobic006G221200--Sobic010G230700 Sobic004G198400 Sobic004G198400 Sobic006G221200--Sobic004G198400 Sobic006G221200--Sobic007G019400 Sobic006G221200--Sobic001G091801 Sobic006G221200--Sobic010G206200 Sobic006G221200--Sobic005G019700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.