Gene annotation
Transcriptome id Sobic.003G152600.1
Synonym UBQ6, Sb03g013260
Functional annotation 40S ribosomal protein S27a, putative, expressed
UniProt C5XIY6
Pfam PF11976 PF01599
Panther DB PTHR10666
NCBI CDD KOG0004; Ubiquitin/40S ribosomal protein S27a fusion
KEGG Orthology K02977; RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G23410 : Ribosomal protein S27a / Ubiquitin family protein
RAP-DB (Rice) LOC_Os01g22490.1 : 40S ribosomal protein S27a, putative, expressed
MaizeGDB (Corn) Zm00025a042947 , Zm00025a037444 , Zm00025a005173 , Zm00025a050018 , Zm00025a042035 , Zm00025a048116 , Zm00025a036147 , Zm00025a039850 , Zm00025a047018 , Zm00025a013490
Brachypodium KQJ91591 , KQJ93465 , KQK17173 , KQK06725 , KQK04203 , PNT77708 , KQK04197 , KQJ90267 , KQK04204 , KQK07353 , KQJ89932 , KQJ93464 , KQJ93343 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU7Hr1G103170.18 , HORVU7Hr1G103170.17 , HORVU7Hr1G103170.16 , HORVU7Hr1G103170.15 , HORVU7Hr1G103170.14 , HORVU7Hr1G103170.12 , HORVU7Hr1G103170.11 , HORVU2Hr1G104390.3 , HORVU2Hr1G104390.2 , HORVU2Hr1G104390.1 , HORVU2Hr1G104390.7 , HORVU2Hr1G104390.6 , HORVU2Hr1G104390.5 , HORVU2Hr1G104390.4 , HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU7Hr1G113500.1 , HORVU4Hr1G065100.1 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU2Hr1G104410.8 , HORVU2Hr1G104410.9 , HORVU2Hr1G104410.1 , HORVU2Hr1G104410.2 , HORVU2Hr1G104410.3 , HORVU2Hr1G104410.4 , HORVU2Hr1G104410.5 , HORVU2Hr1G104410.6 , HORVU2Hr1G104410.7 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU6Hr1G026200.8 , HORVU6Hr1G020140.8 , HORVU6Hr1G020140.7 , HORVU6Hr1G020140.6 , HORVU6Hr1G020140.5 , HORVU6Hr1G020140.4 , HORVU6Hr1G020140.3 , HORVU6Hr1G020140.2 , HORVU6Hr1G020140.1 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.2 , HORVU1Hr1G023660.3 , HORVU7Hr1G029070.1 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU2Hr1G104410.12 , HORVU2Hr1G104410.13 , HORVU2Hr1G104410.10 , HORVU2Hr1G104410.11 , HORVU2Hr1G104410.16 , HORVU2Hr1G104410.17 , HORVU2Hr1G104410.14 , HORVU2Hr1G104410.15 , HORVU2Hr1G104410.18 , HORVU2Hr1G104410.19 , HORVU4Hr1G065100.3 , HORVU2Hr1G104390.8 , HORVU6Hr1G026260.18 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU6Hr1G026260.11 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU3Hr1G014180.1 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.4 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.4 , HORVU3Hr1G014150.5 , HORVU6Hr1G026260.8 , HORVU6Hr1G026260.9 , HORVU6Hr1G026260.4 , HORVU6Hr1G026260.5 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU6Hr1G026200.9 , HORVU6Hr1G026260.3 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU7Hr1G103330.11 , HORVU7Hr1G103330.13 , HORVU7Hr1G103330.12 , HORVU7Hr1G103330.14 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.12 , HORVU6Hr1G026200.13 , HORVU2Hr1G104410.23 , HORVU2Hr1G104410.22 , HORVU2Hr1G104410.21 , HORVU2Hr1G104410.20 , HORVU2Hr1G104410.26 , HORVU2Hr1G104410.25 , HORVU2Hr1G104410.24 , HORVU6Hr1G026260.21 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.5 , HORVU7Hr1G103330.4 , HORVU7Hr1G103330.6 , HORVU7Hr1G103330.1 , HORVU7Hr1G103330.3 , HORVU7Hr1G103330.2 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU6Hr1G016150.5 , HORVU6Hr1G016150.4 , HORVU6Hr1G016150.6 , HORVU6Hr1G016150.1 , HORVU6Hr1G016150.3 , HORVU6Hr1G016150.2 , HORVU4Hr1G040980.1 , HORVU7Hr1G029100.1 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.3 , HORVU0Hr1G025670.1 , HORVU0Hr1G025670.2 , HORVU0Hr1G025670.6 , HORVU0Hr1G025670.7 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.3 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU6Hr1G026280.16 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.4 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU6Hr1G026200.21 , HORVU6Hr1G026200.22 , HORVU4Hr1G065100.2 , HORVU0Hr1G038500.2 , HORVU0Hr1G038500.3 , HORVU7Hr1G109650.1 , HORVU7Hr1G109650.2 , HORVU2Hr1G048820.1 , HORVU1Hr1G082070.1 , HORVU2Hr1G048830.1 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11 , HORVU1Hr1G087690.10 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.16 , HORVU1Hr1G087690.15 , HORVU1Hr1G087690.14 , HORVU6Hr1G014970.1 , HORVU6Hr1G014970.5 , HORVU6Hr1G014970.6 , HORVU6Hr1G016200.1
Wheat TraesCS6D02G109600 , TraesCS7D02G443100 , TraesCS7D02G474200 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCS2A02G408500 , TraesCS2D02G405500 , TraesCS2B02G426500 , TraesCS7B02G390900 , TraesCS2A02G458000 , TraesCS6A02G087800 , TraesCS4B02G233100 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCSU02G018500 , TraesCS4B02G233100 , TraesCS4D02G218400 , TraesCS7B02G354000 , TraesCS4B02G218100 , TraesCS1B02G241200 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS2D02G458700 , TraesCS7B02G354200 , TraesCS7B02G354100 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS7A02G453600 , TraesCS6D02G137400 , TraesCS6A02G112400 , TraesCS5D02G269800 , TraesCS4D02G234300 , TraesCS4D02G234300 , TraesCS1A02G227100 , TraesCS6B02G140600 , TraesCS2D02G580700 , TraesCS4A02G086300 , TraesCS2B02G480300 , TraesCS2B02G480400 , TraesCSU02G019400 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS7B02G390800 , TraesCS2A02G408200 , TraesCS7A02G506300 , TraesCS4A02G306500 , TraesCS7A02G487500 , TraesCS1D02G228700
Populus PNT59589 , PNT59588 , PNT59598 , PNT59599 , PNT59596 , PNT59597 , PNT59594 , PNT59595 , PNT59592 , PNT59593 , PNT59590 , PNT59591 , PNT59600


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cDNA sequences
Sobic.003G152600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
2 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
3 Sobic.004G271400 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
4 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
5 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
6 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
7 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
8 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
9 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
10 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
11 Sobic.002G375100 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
12 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
13 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
14 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
15 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
16 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
17 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
18 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
19 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
20 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e


Gene co-expression network
sample Sobic003G152600 Sobic003G152600 Sobic003G408100 Sobic003G408100 Sobic003G152600--Sobic003G408100 Sobic001G054900 Sobic001G054900 Sobic003G152600--Sobic001G054900 Sobic004G271400 Sobic004G271400 Sobic003G152600--Sobic004G271400 Sobic004G331400 Sobic004G331400 Sobic003G152600--Sobic004G331400 Sobic003G322400 Sobic003G322400 Sobic003G152600--Sobic003G322400 Sobic001G376600 Sobic001G376600 Sobic003G152600--Sobic001G376600 Sobic004G103800 Sobic004G103800 Sobic003G152600--Sobic004G103800 Sobic010G206200 Sobic010G206200 Sobic003G152600--Sobic010G206200 Sobic001G374700 Sobic001G374700 Sobic003G152600--Sobic001G374700 Sobic003G408100--Sobic001G054900 Sobic003G408100--Sobic003G152600 Sobic001G018900 Sobic001G018900 Sobic003G408100--Sobic001G018900 Sobic009G163800 Sobic009G163800 Sobic003G408100--Sobic009G163800 Sobic006G116700 Sobic006G116700 Sobic003G408100--Sobic006G116700 Sobic003G408100--Sobic010G206200 Sobic009G050300 Sobic009G050300 Sobic003G408100--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic003G408100--Sobic001G036900 Sobic009G215200 Sobic009G215200 Sobic003G408100--Sobic009G215200 Sobic001G054900--Sobic003G408100 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic007G019000 Sobic007G019000 Sobic001G054900--Sobic007G019000 Sobic001G054900--Sobic009G163800 Sobic001G054900--Sobic001G036900 Sobic001G054900--Sobic001G018900 Sobic001G091801 Sobic001G091801 Sobic001G054900--Sobic001G091801 Sobic004G271400--Sobic003G152600 Sobic002G414700 Sobic002G414700 Sobic004G271400--Sobic002G414700 Sobic004G271400--Sobic003G322400 Sobic004G271400--Sobic001G054900 Sobic005G019700 Sobic005G019700 Sobic004G271400--Sobic005G019700 Sobic004G271400--Sobic009G050300 Sobic004G271400--Sobic004G331400 Sobic004G008400 Sobic004G008400 Sobic004G271400--Sobic004G008400 Sobic007G178600 Sobic007G178600 Sobic004G271400--Sobic007G178600 Sobic002G175100 Sobic002G175100 Sobic004G331400--Sobic002G175100 Sobic004G331400--Sobic001G376600 Sobic004G331400--Sobic009G163800 Sobic009G105700 Sobic009G105700 Sobic004G331400--Sobic009G105700 Sobic004G331400--Sobic003G408100 Sobic003G346600 Sobic003G346600 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic004G331400--Sobic001G091801 Sobic003G322400--Sobic009G050300 Sobic003G322400--Sobic001G091801 Sobic007G212600 Sobic007G212600 Sobic003G322400--Sobic007G212600 Sobic003G322400--Sobic006G116700 Sobic003G322400--Sobic001G054900 Sobic003G322400--Sobic003G408100 Sobic003G322400--Sobic001G374700 Sobic002G200600 Sobic002G200600 Sobic003G322400--Sobic002G200600 Sobic007G184600 Sobic007G184600 Sobic003G322400--Sobic007G184600 Sobic001G376600--Sobic004G331400 Sobic001G376600--Sobic009G105700 Sobic001G376600--Sobic010G206200 Sobic001G376600--Sobic001G091801 Sobic001G376600--Sobic002G175100 Sobic001G376600--Sobic009G050300 Sobic006G106100 Sobic006G106100 Sobic001G376600--Sobic006G106100 Sobic001G376600--Sobic005G019700 Sobic006G221200 Sobic006G221200 Sobic001G376600--Sobic006G221200 Sobic004G104100 Sobic004G104100 Sobic004G103800--Sobic004G104100 Sobic004G104300 Sobic004G104300 Sobic004G103800--Sobic004G104300 Sobic004G103800--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic004G103800--Sobic010G166100 Sobic004G152700 Sobic004G152700 Sobic004G103800--Sobic004G152700 Sobic004G103800--Sobic001G091801 Sobic010G230700 Sobic010G230700 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic004G103800--Sobic007G018300 Sobic010G206200--Sobic009G050300 Sobic009G054800 Sobic009G054800 Sobic010G206200--Sobic009G054800 Sobic010G206200--Sobic001G054900 Sobic010G251600 Sobic010G251600 Sobic010G206200--Sobic010G251600 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic010G206200--Sobic003G408100 Sobic003G078200 Sobic003G078200 Sobic010G206200--Sobic003G078200 Sobic007G019400 Sobic007G019400 Sobic010G206200--Sobic007G019400 Sobic001G374700--Sobic002G175100 Sobic001G374700--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic001G374700--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic001G374700--Sobic002G081600 Sobic006G047400 Sobic006G047400 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic001G374700--Sobic001G493001
Octagon: transcription factors


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