Gene annotation
Transcriptome id Sobic.006G106100.1
Synonym Sb06g018900
Functional annotation ribosomal protein, putative, expressed
UniProt C5Y9U0
Pfam PF00411
Panther DB PTHR11759 PTHR11759:SF11
NCBI CDD KOG0407; 40S ribosomal protein S14
KEGG Orthology K02955; RP-S14e, small subunit ribosomal protein S14e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G52580 : Ribosomal protein S11 family protein
RAP-DB (Rice) LOC_Os02g06700.2 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a041877 , Zm00025a041876 , Zm00025a041875 , Zm00025a051381 , Zm00025a018134
Brachypodium KQJ82526 , KQK17170
Barley HORVU7Hr1G104220.4 , HORVU7Hr1G104220.5 , HORVU7Hr1G104220.2 , HORVU7Hr1G104220.3 , HORVU1Hr1G076240.1 , HORVU1Hr1G076240.2 , HORVU7Hr1G091030.1 , HORVU6Hr1G085630.1 , HORVU1Hr1G058980.1 , HORVU6Hr1G026350.1
Wheat TraesCS2B02G312000 , TraesCS2D02G293300 , TraesCS7B02G355300 , TraesCS6D02G126300 , TraesCS2D02G293400 , TraesCS6B02G165600 , TraesCS2A02G295600
Populus -


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cDNA sequences
Sobic.006G106100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
2 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
3 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
4 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
5 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
6 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
7 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
8 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
9 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
10 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
11 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
12 Sobic.004G145801 - K02978: RP-S27e, small subunit ribosomal protein S27e
13 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
14 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
15 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
16 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
17 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
18 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
19 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
20 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e


Gene co-expression network
sample Sobic006G106100 Sobic006G106100 Sobic001G091801 Sobic001G091801 Sobic006G106100--Sobic001G091801 Sobic007G019400 Sobic007G019400 Sobic006G106100--Sobic007G019400 Sobic001G376600 Sobic001G376600 Sobic006G106100--Sobic001G376600 Sobic010G206200 Sobic010G206200 Sobic006G106100--Sobic010G206200 Sobic010G251600 Sobic010G251600 Sobic006G106100--Sobic010G251600 Sobic004G280700 Sobic004G280700 Sobic006G106100--Sobic004G280700 Sobic002G175100 Sobic002G175100 Sobic006G106100--Sobic002G175100 Sobic004G331400 Sobic004G331400 Sobic006G106100--Sobic004G331400 Sobic001G054900 Sobic001G054900 Sobic006G106100--Sobic001G054900 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic004G104100 Sobic004G104100 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic009G050300 Sobic009G050300 Sobic001G091801--Sobic009G050300 Sobic009G166500 Sobic009G166500 Sobic001G091801--Sobic009G166500 Sobic009G163800 Sobic009G163800 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic001G091801--Sobic002G175100 Sobic003G249700 Sobic003G249700 Sobic007G019400--Sobic003G249700 Sobic009G076400 Sobic009G076400 Sobic007G019400--Sobic009G076400 Sobic002G047600 Sobic002G047600 Sobic007G019400--Sobic002G047600 Sobic007G019400--Sobic010G251600 Sobic007G019400--Sobic010G206200 Sobic006G213000 Sobic006G213000 Sobic007G019400--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic007G019400--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic007G019400--Sobic002G056200 Sobic001G226500 Sobic001G226500 Sobic007G019400--Sobic001G226500 Sobic001G376600--Sobic004G331400 Sobic009G105700 Sobic009G105700 Sobic001G376600--Sobic009G105700 Sobic001G376600--Sobic010G206200 Sobic001G376600--Sobic001G091801 Sobic001G376600--Sobic002G175100 Sobic001G376600--Sobic009G050300 Sobic001G376600--Sobic006G106100 Sobic001G376600--Sobic005G019700 Sobic006G221200 Sobic006G221200 Sobic001G376600--Sobic006G221200 Sobic010G206200--Sobic009G050300 Sobic009G054800 Sobic009G054800 Sobic010G206200--Sobic009G054800 Sobic010G206200--Sobic001G054900 Sobic010G206200--Sobic010G251600 Sobic009G215200 Sobic009G215200 Sobic010G206200--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G206200--Sobic001G403500 Sobic003G408100 Sobic003G408100 Sobic010G206200--Sobic003G408100 Sobic003G078200 Sobic003G078200 Sobic010G206200--Sobic003G078200 Sobic010G206200--Sobic007G019400 Sobic010G251600--Sobic010G206200 Sobic010G251600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic010G251600--Sobic003G436700 Sobic007G178600 Sobic007G178600 Sobic010G251600--Sobic007G178600 Sobic010G251600--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic010G251600--Sobic006G116700 Sobic010G251600--Sobic003G078200 Sobic010G251600--Sobic001G054900 Sobic010G251600--Sobic004G331400 Sobic004G198400 Sobic004G198400 Sobic004G280700--Sobic004G198400 Sobic004G280700--Sobic001G091801 Sobic004G280700--Sobic009G215200 Sobic004G280700--Sobic009G166500 Sobic004G280700--Sobic006G213000 Sobic004G280700--Sobic009G050300 Sobic006G047400 Sobic006G047400 Sobic004G280700--Sobic006G047400 Sobic004G280700--Sobic006G116700 Sobic004G280700--Sobic010G206200 Sobic002G175100--Sobic004G331400 Sobic001G374700 Sobic001G374700 Sobic002G175100--Sobic001G374700 Sobic002G175100--Sobic009G215200 Sobic002G175100--Sobic006G116700 Sobic002G175100--Sobic001G091801 Sobic002G175100--Sobic006G047400 Sobic002G175100--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic002G175100--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic002G175100--Sobic003G346600 Sobic004G331400--Sobic002G175100 Sobic004G331400--Sobic001G376600 Sobic004G331400--Sobic009G163800 Sobic004G331400--Sobic009G105700 Sobic004G331400--Sobic003G408100 Sobic004G331400--Sobic003G346600 Sobic004G331400--Sobic009G050300 Sobic004G331400--Sobic007G178600 Sobic004G331400--Sobic001G091801 Sobic001G054900--Sobic003G408100 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic007G019000 Sobic007G019000 Sobic001G054900--Sobic007G019000 Sobic001G054900--Sobic009G163800 Sobic001G036900 Sobic001G036900 Sobic001G054900--Sobic001G036900 Sobic001G018900 Sobic001G018900 Sobic001G054900--Sobic001G018900 Sobic001G054900--Sobic001G091801
Octagon: transcription factors


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