Gene annotation
Transcriptome id Sobic.004G145801.1
Synonym -
Functional annotation -
UniProt -
Pfam PF01667
Panther DB PTHR11594:SF5 PTHR11594
NCBI CDD KOG1779; 40s ribosomal protein S27
KEGG Orthology K02978; RP-S27e, small subunit ribosomal protein S27e
Gene Ontology GO:0003735; structural constituent of ribosome GO:0005622intracellular GO:0005840ribosome GO:0006412translation


Orthologs (automatic annotation)
TAIR AT3G61110 : ribosomal protein S27
RAP-DB (Rice) LOC_Os04g27860.1 : 40S ribosomal protein S27, putative, expressed
MaizeGDB (Corn) Zm00025a034241 , Zm00025a016818
Brachypodium PNT60941 , KQJ99489
Barley HORVU7Hr1G112740.4 , HORVU7Hr1G112740.5 , HORVU4Hr1G074270.1 , HORVU6Hr1G058350.1 , HORVU6Hr1G058350.2 , HORVU4Hr1G014130.2 , HORVU4Hr1G014130.1
Wheat TraesCS4D02G080900 , TraesCS4A02G022600 , TraesCS4B02G280800 , TraesCS7B02G408800 , TraesCS7A02G501300 , TraesCS4B02G082600 , TraesCS4A02G233300 , TraesCS7D02G488700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
2 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
3 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
4 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
5 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
6 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
7 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
8 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
9 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
10 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
11 Sobic.006G106100 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
12 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
13 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
14 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
15 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
16 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
17 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
18 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
19 Sobic.001G046100 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
20 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e


Gene co-expression network
sample Sobic004G145801 Sobic004G145801 Sobic001G091801 Sobic001G091801 Sobic004G145801--Sobic001G091801 Sobic004G104100 Sobic004G104100 Sobic004G145801--Sobic004G104100 Sobic005G019700 Sobic005G019700 Sobic004G145801--Sobic005G019700 Sobic007G212600 Sobic007G212600 Sobic004G145801--Sobic007G212600 Sobic010G230700 Sobic010G230700 Sobic004G145801--Sobic010G230700 Sobic004G103800 Sobic004G103800 Sobic004G145801--Sobic004G103800 Sobic004G280700 Sobic004G280700 Sobic004G145801--Sobic004G280700 Sobic001G054900 Sobic001G054900 Sobic004G145801--Sobic001G054900 Sobic004G104300 Sobic004G104300 Sobic004G145801--Sobic004G104300 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic009G050300 Sobic009G050300 Sobic001G091801--Sobic009G050300 Sobic009G166500 Sobic009G166500 Sobic001G091801--Sobic009G166500 Sobic009G163800 Sobic009G163800 Sobic001G091801--Sobic009G163800 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic004G104100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic004G104100--Sobic006G221200 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic010G166100 Sobic010G166100 Sobic004G104100--Sobic010G166100 Sobic004G104100--Sobic004G104300 Sobic004G104100--Sobic005G019700 Sobic004G104100--Sobic009G166500 Sobic004G104100--Sobic009G050300 Sobic005G019700--Sobic010G230700 Sobic005G019700--Sobic009G050300 Sobic007G018300 Sobic007G018300 Sobic005G019700--Sobic007G018300 Sobic009G054800 Sobic009G054800 Sobic005G019700--Sobic009G054800 Sobic006G116700 Sobic006G116700 Sobic005G019700--Sobic006G116700 Sobic005G019700--Sobic001G091801 Sobic007G197800 Sobic007G197800 Sobic005G019700--Sobic007G197800 Sobic003G078200 Sobic003G078200 Sobic005G019700--Sobic003G078200 Sobic010G206200 Sobic010G206200 Sobic005G019700--Sobic010G206200 Sobic007G212600--Sobic001G091801 Sobic007G212600--Sobic003G322400 Sobic001G374700 Sobic001G374700 Sobic007G212600--Sobic001G374700 Sobic007G212600--Sobic009G166500 Sobic001G016400 Sobic001G016400 Sobic007G212600--Sobic001G016400 Sobic003G321700 Sobic003G321700 Sobic007G212600--Sobic003G321700 Sobic007G212600--Sobic004G104100 Sobic010G260100 Sobic010G260100 Sobic007G212600--Sobic010G260100 Sobic007G212600--Sobic009G050300 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic010G230700--Sobic004G104100 Sobic010G230700--Sobic009G054800 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic010G230700--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic004G103800--Sobic007G019000 Sobic004G103800--Sobic010G166100 Sobic004G152700 Sobic004G152700 Sobic004G103800--Sobic004G152700 Sobic004G103800--Sobic001G091801 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic004G103800--Sobic007G018300 Sobic004G198400 Sobic004G198400 Sobic004G280700--Sobic004G198400 Sobic004G280700--Sobic001G091801 Sobic009G215200 Sobic009G215200 Sobic004G280700--Sobic009G215200 Sobic004G280700--Sobic009G166500 Sobic006G213000 Sobic006G213000 Sobic004G280700--Sobic006G213000 Sobic004G280700--Sobic009G050300 Sobic006G047400 Sobic006G047400 Sobic004G280700--Sobic006G047400 Sobic004G280700--Sobic006G116700 Sobic004G280700--Sobic010G206200 Sobic003G408100 Sobic003G408100 Sobic001G054900--Sobic003G408100 Sobic001G054900--Sobic010G206200 Sobic001G054900--Sobic009G050300 Sobic001G054900--Sobic006G116700 Sobic001G054900--Sobic007G019000 Sobic001G054900--Sobic009G163800 Sobic001G036900 Sobic001G036900 Sobic001G054900--Sobic001G036900 Sobic001G018900 Sobic001G018900 Sobic001G054900--Sobic001G018900 Sobic001G054900--Sobic001G091801 Sobic004G104300--Sobic004G103800 Sobic004G104300--Sobic004G104100 Sobic010G259900 Sobic010G259900 Sobic004G104300--Sobic010G259900 Sobic004G104300--Sobic010G230700 Sobic004G104300--Sobic003G408100 Sobic004G104300--Sobic007G018300 Sobic004G104300--Sobic001G091801 Sobic004G104300--Sobic003G322400 Sobic004G104300--Sobic005G019700
Octagon: transcription factors


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