Gene annotation
Transcriptome id Sobic.001G046300.1
Synonym Sb01g004260
Functional annotation ribosomal protein, putative, expressed
UniProt C5WW48 , Q0H634
Pfam PF03719 PF00333
Panther DB PTHR13718 PTHR13718:SF69
NCBI CDD KOG0877; 40S ribosomal protein S2/30S ribosomal protein S5
KEGG Orthology K02981; RP-S2e, small subunit ribosomal protein S2e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT3G57490 : Ribosomal protein S5 family protein
RAP-DB (Rice) LOC_Os03g59310.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a045372 , Zm00025a016506 , Zm00025a008670
Brachypodium KQK20398 , KQK12579
Barley HORVU3Hr1G086050.4 , HORVU3Hr1G086050.1 , HORVU3Hr1G086050.2 , HORVU3Hr1G086050.3 , HORVU5Hr1G109910.5 , HORVU5Hr1G109910.4 , HORVU5Hr1G109910.3 , HORVU5Hr1G109910.2
Wheat TraesCS3D02G338200 , TraesCS5B02G468500 , TraesCS5A02G458900 , TraesCS3A02G366100 , TraesCS5D02G470000
Populus -


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cDNA sequences
Sobic.001G046300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G212600 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
2 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
3 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
4 Sobic.002G364100 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
5 Sobic.002G259000 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
6 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
7 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
8 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
9 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
10 Sobic.004G145801 - K02978: RP-S27e, small subunit ribosomal protein S27e
11 Sobic.010G182600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
12 Sobic.010G260100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
13 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
14 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
15 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
16 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
17 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
18 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
19 Sobic.001G046100 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
20 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e


Gene co-expression network
sample Sobic001G046300 Sobic001G046300 Sobic007G212600 Sobic007G212600 Sobic001G046300--Sobic007G212600 Sobic004G103800 Sobic004G103800 Sobic001G046300--Sobic004G103800 Sobic001G091801 Sobic001G091801 Sobic001G046300--Sobic001G091801 Sobic002G364100 Sobic002G364100 Sobic001G046300--Sobic002G364100 Sobic002G259000 Sobic002G259000 Sobic001G046300--Sobic002G259000 Sobic004G104100 Sobic004G104100 Sobic001G046300--Sobic004G104100 Sobic001G011200 Sobic001G011200 Sobic001G046300--Sobic001G011200 Sobic004G104300 Sobic004G104300 Sobic001G046300--Sobic004G104300 Sobic009G163800 Sobic009G163800 Sobic001G046300--Sobic009G163800 Sobic007G212600--Sobic001G091801 Sobic003G322400 Sobic003G322400 Sobic007G212600--Sobic003G322400 Sobic001G374700 Sobic001G374700 Sobic007G212600--Sobic001G374700 Sobic009G166500 Sobic009G166500 Sobic007G212600--Sobic009G166500 Sobic001G016400 Sobic001G016400 Sobic007G212600--Sobic001G016400 Sobic003G321700 Sobic003G321700 Sobic007G212600--Sobic003G321700 Sobic007G212600--Sobic004G104100 Sobic010G260100 Sobic010G260100 Sobic007G212600--Sobic010G260100 Sobic009G050300 Sobic009G050300 Sobic007G212600--Sobic009G050300 Sobic004G103800--Sobic004G104100 Sobic004G103800--Sobic004G104300 Sobic007G019000 Sobic007G019000 Sobic004G103800--Sobic007G019000 Sobic010G166100 Sobic010G166100 Sobic004G103800--Sobic010G166100 Sobic004G152700 Sobic004G152700 Sobic004G103800--Sobic004G152700 Sobic004G103800--Sobic001G091801 Sobic010G230700 Sobic010G230700 Sobic004G103800--Sobic010G230700 Sobic004G322200 Sobic004G322200 Sobic004G103800--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic004G103800--Sobic007G018300 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic002G364500 Sobic002G364500 Sobic002G364100--Sobic002G364500 Sobic002G364100--Sobic001G046300 Sobic002G364100--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic002G364100--Sobic006G260400 Sobic009G022400 Sobic009G022400 Sobic002G364100--Sobic009G022400 Sobic010G182600 Sobic010G182600 Sobic002G364100--Sobic010G182600 Sobic002G364100--Sobic001G091801 Sobic002G364100--Sobic010G166100 Sobic004G331400 Sobic004G331400 Sobic002G364100--Sobic004G331400 Sobic002G259000--Sobic004G103800 Sobic002G259000--Sobic004G152700 Sobic002G259000--Sobic010G182600 Sobic002G259000--Sobic001G046300 Sobic010G182300 Sobic010G182300 Sobic002G259000--Sobic010G182300 Sobic002G259000--Sobic004G145801 Sobic002G258800 Sobic002G258800 Sobic002G259000--Sobic002G258800 Sobic002G259000--Sobic004G104100 Sobic002G259000--Sobic002G364100 Sobic004G104100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic004G104100--Sobic006G221200 Sobic004G104100--Sobic004G103800 Sobic004G104100--Sobic010G230700 Sobic004G104100--Sobic010G166100 Sobic004G104100--Sobic004G104300 Sobic004G104100--Sobic005G019700 Sobic004G104100--Sobic009G166500 Sobic004G104100--Sobic009G050300 Sobic001G436200 Sobic001G436200 Sobic001G011200--Sobic001G436200 Sobic002G374900 Sobic002G374900 Sobic001G011200--Sobic002G374900 Sobic001G011200--Sobic001G091801 Sobic002G056200 Sobic002G056200 Sobic001G011200--Sobic002G056200 Sobic004G198400 Sobic004G198400 Sobic001G011200--Sobic004G198400 Sobic003G280700 Sobic003G280700 Sobic001G011200--Sobic003G280700 Sobic001G403500 Sobic001G403500 Sobic001G011200--Sobic001G403500 Sobic001G011200--Sobic001G046300 Sobic001G011200--Sobic001G016400 Sobic004G104300--Sobic004G103800 Sobic004G104300--Sobic004G104100 Sobic010G259900 Sobic010G259900 Sobic004G104300--Sobic010G259900 Sobic004G104300--Sobic010G230700 Sobic003G408100 Sobic003G408100 Sobic004G104300--Sobic003G408100 Sobic004G104300--Sobic007G018300 Sobic004G104300--Sobic001G091801 Sobic004G104300--Sobic003G322400 Sobic004G104300--Sobic005G019700 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic006G047400 Sobic006G047400 Sobic009G163800--Sobic006G047400 Sobic009G163800--Sobic003G408100 Sobic009G163800--Sobic004G331400 Sobic002G081600 Sobic002G081600 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801
Octagon: transcription factors


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