Gene annotation
Transcriptome id Sobic.009G065400.1
Synonym ATBBC1, BBC1, RSU2, Sb09g005460
Functional annotation ribosomal protein L13, putative, expressed
UniProt C5Z173
Pfam PF01294
Panther DB PTHR11722 PTHR11722:SF1
NCBI CDD KOG3295; 60S Ribosomal protein L13
KEGG Orthology K02873; RP-L13e, large subunit ribosomal protein L13e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G49010 : breast basic conserved 1
RAP-DB (Rice) LOC_Os06g02510.2 : ribosomal protein L13, putative, expressed
MaizeGDB (Corn) Zm00025a039272 , Zm00025a043030 , Zm00025a026228
Brachypodium KQJ95272 , KQJ92918
Barley HORVU7Hr1G067060.2 , HORVU7Hr1G067060.3 , HORVU6Hr1G009400.3 , HORVU6Hr1G009400.2 , HORVU7Hr1G067060.1
Wheat TraesCS7A02G296800 , TraesCS7D02G292800 , TraesCS6B02G064300 , TraesCS6D02G055400 , TraesCS6B02G064300 , TraesCS7B02G189800 , TraesCS7B02G189800 , TraesCS6A02G047900 , TraesCS6A02G047900
Populus -


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cDNA sequences
Sobic.009G065400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
2 Sobic.010G182600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
3 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
4 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
5 Sobic.002G364100 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
6 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
7 Sobic.002G259000 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
8 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
9 Sobic.010G182300 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
10 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
11 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
12 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
13 Sobic.002G258800 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
14 Sobic.009G022400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
15 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
16 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
17 Sobic.001G331900 expressed protein -
18 Sobic.004G103800 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
19 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
20 Sobic.010G173100 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma


Gene co-expression network
sample Sobic009G065400 Sobic009G065400 Sobic001G046300 Sobic001G046300 Sobic009G065400--Sobic001G046300 Sobic010G182600 Sobic010G182600 Sobic009G065400--Sobic010G182600 Sobic003G025200 Sobic003G025200 Sobic009G065400--Sobic003G025200 Sobic001G011200 Sobic001G011200 Sobic009G065400--Sobic001G011200 Sobic002G364100 Sobic002G364100 Sobic009G065400--Sobic002G364100 Sobic001G377800 Sobic001G377800 Sobic009G065400--Sobic001G377800 Sobic002G259000 Sobic002G259000 Sobic009G065400--Sobic002G259000 Sobic002G374900 Sobic002G374900 Sobic009G065400--Sobic002G374900 Sobic010G182300 Sobic010G182300 Sobic009G065400--Sobic010G182300 Sobic007G212600 Sobic007G212600 Sobic001G046300--Sobic007G212600 Sobic004G103800 Sobic004G103800 Sobic001G046300--Sobic004G103800 Sobic001G091801 Sobic001G091801 Sobic001G046300--Sobic001G091801 Sobic001G046300--Sobic002G364100 Sobic001G046300--Sobic002G259000 Sobic004G104100 Sobic004G104100 Sobic001G046300--Sobic004G104100 Sobic001G046300--Sobic001G011200 Sobic004G104300 Sobic004G104300 Sobic001G046300--Sobic004G104300 Sobic009G163800 Sobic009G163800 Sobic001G046300--Sobic009G163800 Sobic010G182600--Sobic002G259000 Sobic010G182600--Sobic001G046300 Sobic010G182200 Sobic010G182200 Sobic010G182600--Sobic010G182200 Sobic010G182600--Sobic002G364100 Sobic004G145801 Sobic004G145801 Sobic010G182600--Sobic004G145801 Sobic010G182600--Sobic001G091801 Sobic010G182600--Sobic009G065400 Sobic002G406500 Sobic002G406500 Sobic010G182600--Sobic002G406500 Sobic002G364500 Sobic002G364500 Sobic010G182600--Sobic002G364500 Sobic003G025200--Sobic001G377800 Sobic006G081100 Sobic006G081100 Sobic003G025200--Sobic006G081100 Sobic001G085400 Sobic001G085400 Sobic003G025200--Sobic001G085400 Sobic003G025200--Sobic002G406500 Sobic001G058900 Sobic001G058900 Sobic003G025200--Sobic001G058900 Sobic006G201500 Sobic006G201500 Sobic003G025200--Sobic006G201500 Sobic002G049300 Sobic002G049300 Sobic003G025200--Sobic002G049300 Sobic008G058300 Sobic008G058300 Sobic003G025200--Sobic008G058300 Sobic002G115000 Sobic002G115000 Sobic003G025200--Sobic002G115000 Sobic001G436200 Sobic001G436200 Sobic001G011200--Sobic001G436200 Sobic001G011200--Sobic002G374900 Sobic001G011200--Sobic001G091801 Sobic002G056200 Sobic002G056200 Sobic001G011200--Sobic002G056200 Sobic004G198400 Sobic004G198400 Sobic001G011200--Sobic004G198400 Sobic003G280700 Sobic003G280700 Sobic001G011200--Sobic003G280700 Sobic001G403500 Sobic001G403500 Sobic001G011200--Sobic001G403500 Sobic001G011200--Sobic001G046300 Sobic001G016400 Sobic001G016400 Sobic001G011200--Sobic001G016400 Sobic002G364100--Sobic002G364500 Sobic002G364100--Sobic001G046300 Sobic002G364100--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic002G364100--Sobic006G260400 Sobic009G022400 Sobic009G022400 Sobic002G364100--Sobic009G022400 Sobic002G364100--Sobic010G182600 Sobic002G364100--Sobic001G091801 Sobic010G166100 Sobic010G166100 Sobic002G364100--Sobic010G166100 Sobic004G331400 Sobic004G331400 Sobic002G364100--Sobic004G331400 Sobic001G377800--Sobic002G406500 Sobic001G377800--Sobic004G104100 Sobic001G377800--Sobic001G085400 Sobic001G377800--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic001G377800--Sobic006G081100 Sobic001G377800--Sobic002G049300 Sobic009G050300 Sobic009G050300 Sobic001G377800--Sobic009G050300 Sobic002G259000--Sobic004G103800 Sobic004G152700 Sobic004G152700 Sobic002G259000--Sobic004G152700 Sobic002G259000--Sobic010G182600 Sobic002G259000--Sobic001G046300 Sobic002G259000--Sobic010G182300 Sobic002G259000--Sobic004G145801 Sobic002G258800 Sobic002G258800 Sobic002G259000--Sobic002G258800 Sobic002G259000--Sobic004G104100 Sobic002G259000--Sobic002G364100 Sobic002G374900--Sobic001G436200 Sobic002G374900--Sobic001G091801 Sobic002G374900--Sobic004G198400 Sobic002G374900--Sobic001G016400 Sobic002G374900--Sobic001G011200 Sobic002G374900--Sobic009G050300 Sobic002G374900--Sobic007G019000 Sobic002G374900--Sobic010G166100 Sobic002G374900--Sobic004G104100 Sobic010G182300--Sobic002G258800 Sobic010G182300--Sobic002G259000 Sobic010G182300--Sobic004G152700 Sobic010G182300--Sobic004G103800 Sobic010G259900 Sobic010G259900 Sobic010G182300--Sobic010G259900 Sobic010G182300--Sobic001G046300 Sobic010G260100 Sobic010G260100 Sobic010G182300--Sobic010G260100 Sobic010G182300--Sobic009G065400 Sobic010G182300--Sobic010G182600
Octagon: transcription factors


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