Gene annotation
Transcriptome id Sobic.010G173100.1
Synonym Sb10g022570
Functional annotation elongation factor 1-gamma, putative, expressed
UniProt C5Z529
Pfam PF14497 PF02798 PF00647
Panther DB PTHR11260 PTHR11260:SF194
NCBI CDD KOG1627; Translation elongation factor EF-1 gamma
KEGG Orthology K03233; elongation factor 1-gamma
Gene Ontology GO:0005515; protein binding GO:0006414translational elongation GO:0003746translation elongation factor activity


Orthologs (automatic annotation)
TAIR AT1G09640 : Translation elongation factor EF1B, gamma chain
RAP-DB (Rice) LOC_Os06g37440.1 : elongation factor 1-gamma, putative, expressed
MaizeGDB (Corn) Zm00025a034557 , Zm00025a042298 , Zm00025a020183 , Zm00025a051148
Brachypodium KQK17900 , KQK17901
Barley HORVU7Hr1G087050.7 , HORVU7Hr1G087050.6 , HORVU7Hr1G087050.5 , HORVU7Hr1G087050.4 , HORVU7Hr1G087050.3 , HORVU7Hr1G087050.2 , HORVU7Hr1G087050.1 , HORVU7Hr1G087050.8
Wheat TraesCS7D02G360200 , TraesCS7D02G360200 , TraesCS7A02G362900 , TraesCS7B02G266300 , TraesCS7B02G266300
Populus PNS91030 , PNS91029 , PNT42675


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cDNA sequences
Sobic.010G173100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
2 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
3 Sobic.003G107600 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase
4 Sobic.010G182600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
5 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
6 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
7 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
8 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
9 Sobic.001G046300 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
10 Sobic.007G095400 expressed protein -
11 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
12 Sobic.002G259000 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
13 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
14 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
15 Sobic.010G182200 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
16 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
17 Sobic.010G182300 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
18 Sobic.001G022900 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
19 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
20 Sobic.010G260100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e


Gene co-expression network
sample Sobic010G173100 Sobic010G173100 Sobic002G263800 Sobic002G263800 Sobic010G173100--Sobic002G263800 Sobic002G373800 Sobic002G373800 Sobic010G173100--Sobic002G373800 Sobic003G107600 Sobic003G107600 Sobic010G173100--Sobic003G107600 Sobic010G182600 Sobic010G182600 Sobic010G173100--Sobic010G182600 Sobic009G065400 Sobic009G065400 Sobic010G173100--Sobic009G065400 Sobic008G161800 Sobic008G161800 Sobic010G173100--Sobic008G161800 Sobic002G406500 Sobic002G406500 Sobic010G173100--Sobic002G406500 Sobic001G011200 Sobic001G011200 Sobic010G173100--Sobic001G011200 Sobic001G046300 Sobic001G046300 Sobic010G173100--Sobic001G046300 Sobic002G263800--Sobic008G161800 Sobic007G095400 Sobic007G095400 Sobic002G263800--Sobic007G095400 Sobic001G483100 Sobic001G483100 Sobic002G263800--Sobic001G483100 Sobic009G180000 Sobic009G180000 Sobic002G263800--Sobic009G180000 Sobic002G263800--Sobic010G173100 Sobic010G039800 Sobic010G039800 Sobic002G263800--Sobic010G039800 Sobic009G016201 Sobic009G016201 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300 Sobic001G517600 Sobic001G517600 Sobic002G373800--Sobic001G517600 Sobic002G373800--Sobic010G173100 Sobic002G373800--Sobic002G406500 Sobic002G373800--Sobic002G263800 Sobic003G280700 Sobic003G280700 Sobic002G373800--Sobic003G280700 Sobic001G436200 Sobic001G436200 Sobic002G373800--Sobic001G436200 Sobic005G111100 Sobic005G111100 Sobic002G373800--Sobic005G111100 Sobic002G373800--Sobic001G011200 Sobic002G374900 Sobic002G374900 Sobic002G373800--Sobic002G374900 Sobic003G107600--Sobic010G182600 Sobic002G259000 Sobic002G259000 Sobic003G107600--Sobic002G259000 Sobic003G107600--Sobic010G173100 Sobic002G258800 Sobic002G258800 Sobic003G107600--Sobic002G258800 Sobic004G152400 Sobic004G152400 Sobic003G107600--Sobic004G152400 Sobic010G259900 Sobic010G259900 Sobic003G107600--Sobic010G259900 Sobic010G260100 Sobic010G260100 Sobic003G107600--Sobic010G260100 Sobic003G107600--Sobic001G046300 Sobic010G182300 Sobic010G182300 Sobic003G107600--Sobic010G182300 Sobic010G182600--Sobic002G259000 Sobic010G182600--Sobic001G046300 Sobic010G182200 Sobic010G182200 Sobic010G182600--Sobic010G182200 Sobic002G364100 Sobic002G364100 Sobic010G182600--Sobic002G364100 Sobic004G145801 Sobic004G145801 Sobic010G182600--Sobic004G145801 Sobic001G091801 Sobic001G091801 Sobic010G182600--Sobic001G091801 Sobic010G182600--Sobic009G065400 Sobic010G182600--Sobic002G406500 Sobic002G364500 Sobic002G364500 Sobic010G182600--Sobic002G364500 Sobic009G065400--Sobic001G046300 Sobic009G065400--Sobic010G182600 Sobic003G025200 Sobic003G025200 Sobic009G065400--Sobic003G025200 Sobic009G065400--Sobic001G011200 Sobic009G065400--Sobic002G364100 Sobic001G377800 Sobic001G377800 Sobic009G065400--Sobic001G377800 Sobic009G065400--Sobic002G259000 Sobic009G065400--Sobic002G374900 Sobic009G065400--Sobic010G182300 Sobic008G161800--Sobic002G263800 Sobic006G141500 Sobic006G141500 Sobic008G161800--Sobic006G141500 Sobic001G415500 Sobic001G415500 Sobic008G161800--Sobic001G415500 Sobic003G253000 Sobic003G253000 Sobic008G161800--Sobic003G253000 Sobic006G108400 Sobic006G108400 Sobic008G161800--Sobic006G108400 Sobic008G161800--Sobic007G095400 Sobic010G154700 Sobic010G154700 Sobic008G161800--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G161800--Sobic001G132100 Sobic004G248800 Sobic004G248800 Sobic008G161800--Sobic004G248800 Sobic001G085400 Sobic001G085400 Sobic002G406500--Sobic001G085400 Sobic002G406500--Sobic001G377800 Sobic002G406500--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic002G406500--Sobic002G056200 Sobic006G138100 Sobic006G138100 Sobic002G406500--Sobic006G138100 Sobic002G115000 Sobic002G115000 Sobic002G406500--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic002G406500--Sobic002G049300 Sobic002G047600 Sobic002G047600 Sobic002G406500--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic002G406500--Sobic002G304900 Sobic001G011200--Sobic001G436200 Sobic001G011200--Sobic002G374900 Sobic001G011200--Sobic001G091801 Sobic001G011200--Sobic002G056200 Sobic004G198400 Sobic004G198400 Sobic001G011200--Sobic004G198400 Sobic001G011200--Sobic003G280700 Sobic001G403500 Sobic001G403500 Sobic001G011200--Sobic001G403500 Sobic001G011200--Sobic001G046300 Sobic001G016400 Sobic001G016400 Sobic001G011200--Sobic001G016400 Sobic007G212600 Sobic007G212600 Sobic001G046300--Sobic007G212600 Sobic004G103800 Sobic004G103800 Sobic001G046300--Sobic004G103800 Sobic001G046300--Sobic001G091801 Sobic001G046300--Sobic002G364100 Sobic001G046300--Sobic002G259000 Sobic004G104100 Sobic004G104100 Sobic001G046300--Sobic004G104100 Sobic001G046300--Sobic001G011200 Sobic004G104300 Sobic004G104300 Sobic001G046300--Sobic004G104300 Sobic009G163800 Sobic009G163800 Sobic001G046300--Sobic009G163800
Octagon: transcription factors


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