Gene annotation
Transcriptome id Sobic.001G022900.1
Synonym FD3, Sb01g002180, ATFD3
Functional annotation 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
UniProt C5WTY4
Pfam PF00111
Panther DB PTHR19370 PTHR19370:SF127
NCBI CDD -
KEGG Orthology K02639; ferredoxin
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT2G27510 : ferredoxin 3
RAP-DB (Rice) LOC_Os03g61960.2 : 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008938
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G022900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G108400 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
2 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
3 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
4 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
5 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
6 Sobic.010G173100 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
7 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
8 Sobic.006G141500 expressed protein -
9 Sobic.009G111600 expressed protein -
10 Sobic.004G276100 expressed protein -
11 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
12 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
13 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
14 Sobic.010G182600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
15 Sobic.009G143400 chitin-inducible gibberellin-responsive protein, putative, expressed -
16 Sobic.004G183501 - -
17 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
18 Sobic.010G101200 B12D protein, putative, expressed -
19 Sobic.001G132100 expressed protein -
20 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G022900 Sobic001G022900 Sobic006G108400 Sobic006G108400 Sobic001G022900--Sobic006G108400 Sobic008G179500 Sobic008G179500 Sobic001G022900--Sobic008G179500 Sobic003G253000 Sobic003G253000 Sobic001G022900--Sobic003G253000 Sobic004G049900 Sobic004G049900 Sobic001G022900--Sobic004G049900 Sobic001G415500 Sobic001G415500 Sobic001G022900--Sobic001G415500 Sobic010G173100 Sobic010G173100 Sobic001G022900--Sobic010G173100 Sobic008G161800 Sobic008G161800 Sobic001G022900--Sobic008G161800 Sobic006G141500 Sobic006G141500 Sobic001G022900--Sobic006G141500 Sobic009G111600 Sobic009G111600 Sobic001G022900--Sobic009G111600 Sobic006G108400--Sobic004G049900 Sobic006G108400--Sobic003G253000 Sobic006G108400--Sobic008G161800 Sobic009G185800 Sobic009G185800 Sobic006G108400--Sobic009G185800 Sobic006G108400--Sobic001G415500 Sobic004G272800 Sobic004G272800 Sobic006G108400--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic006G108400--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic006G108400--Sobic004G050000 Sobic002G267500 Sobic002G267500 Sobic006G108400--Sobic002G267500 Sobic004G276100 Sobic004G276100 Sobic008G179500--Sobic004G276100 Sobic008G179500--Sobic009G111600 Sobic008G179500--Sobic001G022900 Sobic004G277000 Sobic004G277000 Sobic008G179500--Sobic004G277000 Sobic003G333400 Sobic003G333400 Sobic008G179500--Sobic003G333400 Sobic002G083266 Sobic002G083266 Sobic008G179500--Sobic002G083266 Sobic008G179500--Sobic004G050000 Sobic004G301400 Sobic004G301400 Sobic008G179500--Sobic004G301400 Sobic001G399100 Sobic001G399100 Sobic008G179500--Sobic001G399100 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic003G253000--Sobic002G267500 Sobic003G253000--Sobic004G272800 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic003G253000--Sobic009G185800 Sobic003G253000--Sobic006G108400 Sobic004G049900--Sobic003G253000 Sobic004G049900--Sobic009G185800 Sobic004G049900--Sobic006G108400 Sobic003G130800 Sobic003G130800 Sobic004G049900--Sobic003G130800 Sobic004G049900--Sobic001G459200 Sobic004G049900--Sobic004G050000 Sobic004G049900--Sobic001G415500 Sobic004G049900--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G049900--Sobic001G281400 Sobic001G007200 Sobic001G007200 Sobic001G415500--Sobic001G007200 Sobic001G415500--Sobic008G161800 Sobic001G415500--Sobic003G253000 Sobic009G146100 Sobic009G146100 Sobic001G415500--Sobic009G146100 Sobic001G415500--Sobic006G108400 Sobic001G415500--Sobic006G141500 Sobic001G415500--Sobic004G049900 Sobic004G293700 Sobic004G293700 Sobic001G415500--Sobic004G293700 Sobic010G121300 Sobic010G121300 Sobic001G415500--Sobic010G121300 Sobic002G263800 Sobic002G263800 Sobic010G173100--Sobic002G263800 Sobic002G373800 Sobic002G373800 Sobic010G173100--Sobic002G373800 Sobic003G107600 Sobic003G107600 Sobic010G173100--Sobic003G107600 Sobic010G182600 Sobic010G182600 Sobic010G173100--Sobic010G182600 Sobic009G065400 Sobic009G065400 Sobic010G173100--Sobic009G065400 Sobic010G173100--Sobic008G161800 Sobic002G406500 Sobic002G406500 Sobic010G173100--Sobic002G406500 Sobic001G011200 Sobic001G011200 Sobic010G173100--Sobic001G011200 Sobic001G046300 Sobic001G046300 Sobic010G173100--Sobic001G046300 Sobic008G161800--Sobic002G263800 Sobic008G161800--Sobic006G141500 Sobic008G161800--Sobic001G415500 Sobic008G161800--Sobic003G253000 Sobic008G161800--Sobic006G108400 Sobic007G095400 Sobic007G095400 Sobic008G161800--Sobic007G095400 Sobic010G154700 Sobic010G154700 Sobic008G161800--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G161800--Sobic001G132100 Sobic004G248800 Sobic004G248800 Sobic008G161800--Sobic004G248800 Sobic006G141500--Sobic003G253000 Sobic010G243200 Sobic010G243200 Sobic006G141500--Sobic010G243200 Sobic002G282400 Sobic002G282400 Sobic006G141500--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic006G141500--Sobic002G218000 Sobic004G300900 Sobic004G300900 Sobic006G141500--Sobic004G300900 Sobic003G350300 Sobic003G350300 Sobic006G141500--Sobic003G350300 Sobic006G141500--Sobic008G161800 Sobic006G141500--Sobic004G248800 Sobic006G141500--Sobic002G046100 Sobic004G284500 Sobic004G284500 Sobic009G111600--Sobic004G284500 Sobic001G403700 Sobic001G403700 Sobic009G111600--Sobic001G403700 Sobic009G111600--Sobic004G276100 Sobic009G111600--Sobic008G179500 Sobic009G111600--Sobic002G083266 Sobic003G367451 Sobic003G367451 Sobic009G111600--Sobic003G367451 Sobic010G213400 Sobic010G213400 Sobic009G111600--Sobic010G213400 Sobic009G111600--Sobic004G272800 Sobic009G111600--Sobic001G399100
Octagon: transcription factors


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