Gene annotation
Transcriptome id Sobic.008G179500.1
Synonym ATX1, ATATX1, Sb08g022260
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
heavy metal-associated domain containing protein, expressed
UniProt C5YSH7
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF73
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology K07213; ATOX1, ATX1, copZ, copper chaperone
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G66240 : homolog of anti-oxidant 1
RAP-DB (Rice) LOC_Os08g10480.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004770
Brachypodium PNT75924
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G179500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G276100 expressed protein -
2 Sobic.009G111600 expressed protein -
3 Sobic.001G022900 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
4 Sobic.004G277000 purine permease, putative, expressed -
5 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G083266 - K00326: cytochrome-b5 reductase
7 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
8 Sobic.004G301400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K08331: autophagy-related protein 13
9 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
10 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
11 Sobic.004G284500 ORM1, putative, expressed -
12 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.001G227500 expressed protein -
14 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
15 Sobic.010G121300 nitrate-induced NOI protein, putative, expressed -
16 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
18 Sobic.001G026900 cytidine deaminase, putative, expressed -
19 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
20 Sobic.006G108400 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon


Gene co-expression network
sample Sobic008G179500 Sobic008G179500 Sobic004G276100 Sobic004G276100 Sobic008G179500--Sobic004G276100 Sobic009G111600 Sobic009G111600 Sobic008G179500--Sobic009G111600 Sobic001G022900 Sobic001G022900 Sobic008G179500--Sobic001G022900 Sobic004G277000 Sobic004G277000 Sobic008G179500--Sobic004G277000 Sobic003G333400 Sobic003G333400 Sobic008G179500--Sobic003G333400 Sobic002G083266 Sobic002G083266 Sobic008G179500--Sobic002G083266 Sobic004G050000 Sobic004G050000 Sobic008G179500--Sobic004G050000 Sobic004G301400 Sobic004G301400 Sobic008G179500--Sobic004G301400 Sobic001G399100 Sobic001G399100 Sobic008G179500--Sobic001G399100 Sobic004G276100--Sobic008G179500 Sobic004G272800 Sobic004G272800 Sobic004G276100--Sobic004G272800 Sobic007G078100 Sobic007G078100 Sobic004G276100--Sobic007G078100 Sobic004G276100--Sobic009G111600 Sobic002G329100 Sobic002G329100 Sobic004G276100--Sobic002G329100 Sobic004G276100--Sobic004G050000 Sobic006G108400 Sobic006G108400 Sobic004G276100--Sobic006G108400 Sobic009G043600 Sobic009G043600 Sobic004G276100--Sobic009G043600 Sobic004G284500 Sobic004G284500 Sobic004G276100--Sobic004G284500 Sobic009G111600--Sobic004G284500 Sobic001G403700 Sobic001G403700 Sobic009G111600--Sobic001G403700 Sobic009G111600--Sobic004G276100 Sobic009G111600--Sobic008G179500 Sobic009G111600--Sobic002G083266 Sobic003G367451 Sobic003G367451 Sobic009G111600--Sobic003G367451 Sobic010G213400 Sobic010G213400 Sobic009G111600--Sobic010G213400 Sobic009G111600--Sobic004G272800 Sobic009G111600--Sobic001G399100 Sobic001G022900--Sobic006G108400 Sobic001G022900--Sobic008G179500 Sobic003G253000 Sobic003G253000 Sobic001G022900--Sobic003G253000 Sobic004G049900 Sobic004G049900 Sobic001G022900--Sobic004G049900 Sobic001G415500 Sobic001G415500 Sobic001G022900--Sobic001G415500 Sobic010G173100 Sobic010G173100 Sobic001G022900--Sobic010G173100 Sobic008G161800 Sobic008G161800 Sobic001G022900--Sobic008G161800 Sobic006G141500 Sobic006G141500 Sobic001G022900--Sobic006G141500 Sobic001G022900--Sobic009G111600 Sobic004G277000--Sobic004G050000 Sobic004G277000--Sobic009G043600 Sobic002G249000 Sobic002G249000 Sobic004G277000--Sobic002G249000 Sobic009G003900 Sobic009G003900 Sobic004G277000--Sobic009G003900 Sobic002G267500 Sobic002G267500 Sobic004G277000--Sobic002G267500 Sobic006G173900 Sobic006G173900 Sobic004G277000--Sobic006G173900 Sobic004G277000--Sobic004G276100 Sobic009G177800 Sobic009G177800 Sobic004G277000--Sobic009G177800 Sobic002G264400 Sobic002G264400 Sobic004G277000--Sobic002G264400 Sobic007G195100 Sobic007G195100 Sobic003G333400--Sobic007G195100 Sobic009G146100 Sobic009G146100 Sobic003G333400--Sobic009G146100 Sobic002G180600 Sobic002G180600 Sobic003G333400--Sobic002G180600 Sobic003G333400--Sobic008G179500 Sobic003G333400--Sobic004G276100 Sobic003G333400--Sobic004G277000 Sobic003G333400--Sobic002G249000 Sobic003G333400--Sobic004G050000 Sobic003G333400--Sobic003G253000 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic002G083266--Sobic010G213400 Sobic002G083266--Sobic004G272800 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic002G090200 Sobic002G090200 Sobic004G050000--Sobic002G090200 Sobic004G050000--Sobic009G177800 Sobic004G050000--Sobic006G108400 Sobic004G301400--Sobic003G367451 Sobic004G301400--Sobic009G111600 Sobic001G236300 Sobic001G236300 Sobic004G301400--Sobic001G236300 Sobic004G301400--Sobic002G083266 Sobic004G301400--Sobic004G276100 Sobic004G301400--Sobic008G179500 Sobic004G301400--Sobic001G403700 Sobic004G301400--Sobic004G272800 Sobic004G130900 Sobic004G130900 Sobic004G301400--Sobic004G130900 Sobic009G033700 Sobic009G033700 Sobic001G399100--Sobic009G033700 Sobic009G046600 Sobic009G046600 Sobic001G399100--Sobic009G046600 Sobic010G107100 Sobic010G107100 Sobic001G399100--Sobic010G107100 Sobic004G186500 Sobic004G186500 Sobic001G399100--Sobic004G186500 Sobic003G019200 Sobic003G019200 Sobic001G399100--Sobic003G019200 Sobic009G200700 Sobic009G200700 Sobic001G399100--Sobic009G200700 Sobic005G028700 Sobic005G028700 Sobic001G399100--Sobic005G028700 Sobic005G229700 Sobic005G229700 Sobic001G399100--Sobic005G229700 Sobic010G086200 Sobic010G086200 Sobic001G399100--Sobic010G086200
Octagon: transcription factors


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