Gene annotation
Transcriptome id Sobic.003G367451.1
Synonym -
Functional annotation -
UniProt A0A1W0W0L8
Pfam PF13774 PF00957
Panther DB PTHR21136 PTHR21136:SF106
NCBI CDD KOG0861; SNARE protein YKT6, synaptobrevin/VAMP syperfamily
KEGG Orthology K08516; synaptobrevin homolog YKT6
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G58060 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os01g64650.1 : VAMP-like protein YKT62, putative, expressed
MaizeGDB (Corn) Zm00025a039565 , Zm00025a039067 , Zm00025a026718
Brachypodium PNT73251 , PNT73250 , KQK11686
Barley HORVU3Hr1G083350.12 , HORVU3Hr1G083350.10 , HORVU3Hr1G083350.11 , HORVU3Hr1G083350.14 , HORVU3Hr1G083350.8 , HORVU3Hr1G083350.9
Wheat TraesCS3B02G410300 , TraesCS3D02G370600 , TraesCS3A02G377500 , TraesCS3A02G377500
Populus PNT32408


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
2 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
3 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
4 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
6 Sobic.002G083266 - K00326: cytochrome-b5 reductase
7 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
9 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
10 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
11 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
12 Sobic.007G045600 MSP domain containing protein, expressed -
13 Sobic.003G323600 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
14 Sobic.003G104700 Rer1 protein, putative, expressed -
15 Sobic.001G132100 expressed protein -
16 Sobic.009G111600 expressed protein -
17 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
18 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
19 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
20 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G367451 Sobic003G367451 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic004G327300--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G327300--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G327300--Sobic007G096700 Sobic002G400000 Sobic002G400000 Sobic004G327300--Sobic002G400000 Sobic004G327300--Sobic004G130900 Sobic001G461900 Sobic001G461900 Sobic004G327300--Sobic001G461900 Sobic009G174900 Sobic009G174900 Sobic004G327300--Sobic009G174900 Sobic009G198500 Sobic009G198500 Sobic004G327300--Sobic009G198500 Sobic004G327300--Sobic007G114200 Sobic001G236300--Sobic003G367451 Sobic004G224900 Sobic004G224900 Sobic001G236300--Sobic004G224900 Sobic001G236300--Sobic007G114200 Sobic001G236300--Sobic004G272800 Sobic001G058100 Sobic001G058100 Sobic001G236300--Sobic001G058100 Sobic001G132100 Sobic001G132100 Sobic001G236300--Sobic001G132100 Sobic006G252200 Sobic006G252200 Sobic001G236300--Sobic006G252200 Sobic004G335000 Sobic004G335000 Sobic001G236300--Sobic004G335000 Sobic007G045600 Sobic007G045600 Sobic001G236300--Sobic007G045600 Sobic007G114200--Sobic007G045600 Sobic007G114200--Sobic003G367451 Sobic007G114200--Sobic001G236300 Sobic009G001400 Sobic009G001400 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800 Sobic002G045300 Sobic002G045300 Sobic001G433400--Sobic002G045300 Sobic001G433400--Sobic002G400000 Sobic001G433400--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic001G433400--Sobic009G146100 Sobic009G135600 Sobic009G135600 Sobic001G433400--Sobic009G135600 Sobic001G433400--Sobic003G253000 Sobic001G433400--Sobic003G220600 Sobic001G433400--Sobic004G327300 Sobic007G186300 Sobic007G186300 Sobic001G433400--Sobic007G186300 Sobic002G267500 Sobic002G267500 Sobic004G272800--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G272800--Sobic001G281400 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic009G111600 Sobic009G111600 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic002G083266--Sobic004G272800 Sobic004G130900--Sobic002G400000 Sobic004G130900--Sobic004G327300 Sobic003G261400 Sobic003G261400 Sobic004G130900--Sobic003G261400 Sobic004G130900--Sobic003G367451 Sobic004G130900--Sobic001G005900 Sobic004G130900--Sobic007G096700 Sobic004G130900--Sobic009G198500 Sobic010G000900 Sobic010G000900 Sobic004G130900--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic004G130900--Sobic007G168600 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic003G253000--Sobic002G267500 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G220600--Sobic003G367451 Sobic003G220600--Sobic009G146100
Octagon: transcription factors


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