Gene annotation
Transcriptome id Sobic.004G327300.1
Synonym Sb04g035670
Functional annotation TMS membrane protein/tumour differentially expressed protein, putative, expressed
UniProt C5XUD6
Pfam PF03348
Panther DB PTHR10383 PTHR10383:SF25
NCBI CDD KOG2592; Tumor differentially expressed (TDE) protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G16180 : Serinc-domain containing serine and sphingolipid biosynthesis protein
RAP-DB (Rice) LOC_Os02g54990.2 : TMS membrane protein/tumour differentially expressed protein, putative, expressed
MaizeGDB (Corn) Zm00025a022440
Brachypodium KQK01101
Barley HORVU6Hr1G084500.1 , HORVU6Hr1G084500.2
Wheat TraesCS6A02G353800 , TraesCS6B02G386500 , TraesCS6D02G336100 , TraesCS6D02G336100
Populus -


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cDNA sequences
Sobic.004G327300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
2 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
3 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
4 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
6 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
7 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
9 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
10 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
11 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
12 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.007G045600 MSP domain containing protein, expressed -
14 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
15 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
16 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
17 Sobic.010G065400 X0001, putative, expressed -
18 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
19 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
20 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5


Gene co-expression network
sample Sobic004G327300 Sobic004G327300 Sobic003G367451 Sobic003G367451 Sobic004G327300--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G327300--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G327300--Sobic007G096700 Sobic002G400000 Sobic002G400000 Sobic004G327300--Sobic002G400000 Sobic004G130900 Sobic004G130900 Sobic004G327300--Sobic004G130900 Sobic001G461900 Sobic001G461900 Sobic004G327300--Sobic001G461900 Sobic009G174900 Sobic009G174900 Sobic004G327300--Sobic009G174900 Sobic009G198500 Sobic009G198500 Sobic004G327300--Sobic009G198500 Sobic007G114200 Sobic007G114200 Sobic004G327300--Sobic007G114200 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic001G005900--Sobic009G198500 Sobic001G005900--Sobic004G327300 Sobic004G300900 Sobic004G300900 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic002G078400 Sobic002G078400 Sobic001G005900--Sobic002G078400 Sobic001G502200 Sobic001G502200 Sobic001G005900--Sobic001G502200 Sobic001G005900--Sobic004G130900 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic007G096700--Sobic009G198500 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic007G096700--Sobic001G501200 Sobic007G096700--Sobic001G005900 Sobic007G096700--Sobic002G400000 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic007G096700--Sobic004G300900 Sobic007G168600 Sobic007G168600 Sobic002G400000--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic002G400000--Sobic003G077900 Sobic002G400000--Sobic009G198500 Sobic002G400000--Sobic004G130900 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic004G130900--Sobic002G400000 Sobic004G130900--Sobic004G327300 Sobic003G261400 Sobic003G261400 Sobic004G130900--Sobic003G261400 Sobic004G130900--Sobic003G367451 Sobic004G130900--Sobic001G005900 Sobic004G130900--Sobic007G096700 Sobic004G130900--Sobic009G198500 Sobic004G130900--Sobic010G000900 Sobic004G130900--Sobic007G168600 Sobic009G135600 Sobic009G135600 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic001G461900--Sobic007G096700 Sobic003G337000 Sobic003G337000 Sobic009G174900--Sobic003G337000 Sobic009G174900--Sobic002G400000 Sobic009G174900--Sobic004G327300 Sobic009G174900--Sobic009G135600 Sobic009G174900--Sobic007G168600 Sobic006G212100 Sobic006G212100 Sobic009G174900--Sobic006G212100 Sobic001G491100 Sobic001G491100 Sobic009G174900--Sobic001G491100 Sobic002G134001 Sobic002G134001 Sobic009G174900--Sobic002G134001 Sobic001G054200 Sobic001G054200 Sobic009G174900--Sobic001G054200 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic003G124800 Sobic003G124800 Sobic009G198500--Sobic003G124800 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic009G198500--Sobic002G078400 Sobic009G198500--Sobic004G300900 Sobic009G198500--Sobic001G005900 Sobic009G198500--Sobic007G096700 Sobic009G198500--Sobic006G212100 Sobic007G114200--Sobic007G045600 Sobic007G114200--Sobic003G367451 Sobic007G114200--Sobic001G236300 Sobic009G001400 Sobic009G001400 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800
Octagon: transcription factors


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