Gene annotation
Transcriptome id Sobic.009G198500.1
Synonym RAB71, RABG3F, ATRABG3F, RAB7B, Sb09g025620, ATRAB7B
Functional annotation ras-related protein, putative, expressed
UniProt C5Z0Z3
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF375
NCBI CDD KOG0394; Ras-related GTPase
KEGG Orthology K07897; Ras-related protein Rab-7A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT3G18820 : RAB GTPase homolog G3F
RAP-DB (Rice) LOC_Os05g44050.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a044233 , Zm00025a035969 , Zm00025a037936
Brachypodium KQK03392 , KQK05380 , KQK05378 , KQK05379
Barley HORVU3Hr1G071820.1 , HORVU1Hr1G076530.6 , HORVU1Hr1G076530.7 , HORVU1Hr1G076530.4 , HORVU1Hr1G076530.5 , HORVU1Hr1G076530.2 , HORVU1Hr1G076530.3 , HORVU1Hr1G076530.1 , HORVU1Hr1G076530.8 , HORVU3Hr1G030910.4 , HORVU3Hr1G030910.1 , HORVU3Hr1G030910.2 , HORVU3Hr1G030910.3
Wheat TraesCS3D02G290000 , TraesCS3B02G179400 , TraesCS1D02G339700 , TraesCS1D02G339700 , TraesCS1A02G337800 , TraesCS3B02G324900 , TraesCS1B02G350200 , TraesCS3A02G152300 , TraesCS3A02G290200 , TraesCS3D02G160100 , TraesCS3D02G160100 , TraesCS3D02G160100 , TraesCS3B02G324900
Populus -


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cDNA sequences
Sobic.009G198500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G272300 expressed protein -
2 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
3 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
5 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
6 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
7 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
8 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
9 Sobic.006G212100 expressed protein -
10 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
11 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
12 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
13 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
14 Sobic.006G262900 expressed protein -
15 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
16 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
17 Sobic.001G054200 green ripe-like, putative, expressed -
18 Sobic.003G386100 selenoprotein precursor, putative, expressed -
19 Sobic.010G065400 X0001, putative, expressed -
20 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit


Gene co-expression network
sample Sobic009G198500 Sobic009G198500 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic003G124800 Sobic003G124800 Sobic009G198500--Sobic003G124800 Sobic002G400000 Sobic002G400000 Sobic009G198500--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic009G198500--Sobic007G168600 Sobic002G078400 Sobic002G078400 Sobic009G198500--Sobic002G078400 Sobic004G300900 Sobic004G300900 Sobic009G198500--Sobic004G300900 Sobic001G005900 Sobic001G005900 Sobic009G198500--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic004G272300--Sobic009G198500 Sobic004G272300--Sobic004G300900 Sobic004G272300--Sobic001G005900 Sobic004G272300--Sobic007G168600 Sobic004G272300--Sobic002G078400 Sobic004G272300--Sobic003G124800 Sobic004G351500 Sobic004G351500 Sobic004G272300--Sobic004G351500 Sobic004G272300--Sobic002G400000 Sobic001G314500 Sobic001G314500 Sobic004G272300--Sobic001G314500 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic006G232200 Sobic006G232200 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic007G045600 Sobic007G045600 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic002G400000--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic002G400000--Sobic003G077900 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic007G168600--Sobic002G400000 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic007G168600--Sobic001G502200 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic007G168600--Sobic001G314500 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic003G362400 Sobic003G362400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic001G445800 Sobic001G445800 Sobic002G078400--Sobic001G445800 Sobic001G331900 Sobic001G331900 Sobic002G078400--Sobic001G331900 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic004G300900--Sobic002G078400 Sobic006G141500 Sobic006G141500 Sobic004G300900--Sobic006G141500 Sobic004G300900--Sobic009G198500 Sobic004G300900--Sobic001G331900 Sobic004G300900--Sobic001G005900 Sobic004G225500 Sobic004G225500 Sobic004G300900--Sobic004G225500 Sobic008G058300 Sobic008G058300 Sobic004G300900--Sobic008G058300 Sobic003G115800 Sobic003G115800 Sobic004G300900--Sobic003G115800 Sobic004G300900--Sobic001G445800 Sobic001G005900--Sobic009G198500 Sobic001G005900--Sobic004G327300 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic001G005900--Sobic002G078400 Sobic001G005900--Sobic001G502200 Sobic001G005900--Sobic004G130900 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic007G096700--Sobic009G198500 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic007G096700--Sobic001G501200 Sobic007G096700--Sobic001G005900 Sobic007G096700--Sobic002G400000 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic007G096700--Sobic004G300900 Sobic001G054200 Sobic001G054200 Sobic006G212100--Sobic001G054200 Sobic006G212100--Sobic009G198500 Sobic006G212100--Sobic001G314500 Sobic006G263900 Sobic006G263900 Sobic006G212100--Sobic006G263900 Sobic006G212100--Sobic002G400000 Sobic006G212100--Sobic007G168600 Sobic009G174900 Sobic009G174900 Sobic006G212100--Sobic009G174900 Sobic010G083700 Sobic010G083700 Sobic006G212100--Sobic010G083700 Sobic006G212100--Sobic001G005900
Octagon: transcription factors


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