Gene annotation
Transcriptome id Sobic.001G005900.1
Synonym Sb01g000630
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5WRY4
Pfam PF01217
Panther DB PTHR11043 PTHR11043:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G15370 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os03g63910.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009106
Brachypodium -
Barley HORVU3Hr1G032710.1 , HORVU3Hr1G032710.2 , HORVU7Hr1G068500.1 , HORVU2Hr1G112780.2 , HORVU2Hr1G112780.1 , HORVU7Hr1G058240.1 , HORVU3Hr1G098440.1 , HORVU6Hr1G069160.1 , HORVU6Hr1G069160.2 , HORVU5Hr1G124070.2 , HORVU5Hr1G124070.1 , HORVU3Hr1G030140.3 , HORVU3Hr1G030140.2 , HORVU3Hr1G030140.1
Wheat TraesCS5B02G559500 , TraesCS5D02G565700
Populus -


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cDNA sequences
Sobic.001G005900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
2 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
3 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
4 Sobic.001G048832 - -
5 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
6 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
7 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
9 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
10 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
11 Sobic.004G272300 expressed protein -
12 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
13 Sobic.007G045600 MSP domain containing protein, expressed -
14 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
15 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
16 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
17 Sobic.001G132100 expressed protein -
18 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
19 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
20 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5


Gene co-expression network
sample Sobic001G005900 Sobic001G005900 Sobic009G198500 Sobic009G198500 Sobic001G005900--Sobic009G198500 Sobic004G327300 Sobic004G327300 Sobic001G005900--Sobic004G327300 Sobic004G300900 Sobic004G300900 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic002G078400 Sobic002G078400 Sobic001G005900--Sobic002G078400 Sobic001G502200 Sobic001G502200 Sobic001G005900--Sobic001G502200 Sobic004G130900 Sobic004G130900 Sobic001G005900--Sobic004G130900 Sobic007G096700 Sobic007G096700 Sobic001G005900--Sobic007G096700 Sobic001G501200 Sobic001G501200 Sobic001G005900--Sobic001G501200 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic003G124800 Sobic003G124800 Sobic009G198500--Sobic003G124800 Sobic002G400000 Sobic002G400000 Sobic009G198500--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic009G198500--Sobic007G168600 Sobic009G198500--Sobic002G078400 Sobic009G198500--Sobic004G300900 Sobic009G198500--Sobic001G005900 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic003G367451 Sobic003G367451 Sobic004G327300--Sobic003G367451 Sobic004G327300--Sobic001G005900 Sobic004G327300--Sobic007G096700 Sobic004G327300--Sobic002G400000 Sobic004G327300--Sobic004G130900 Sobic001G461900 Sobic001G461900 Sobic004G327300--Sobic001G461900 Sobic009G174900 Sobic009G174900 Sobic004G327300--Sobic009G174900 Sobic004G327300--Sobic009G198500 Sobic007G114200 Sobic007G114200 Sobic004G327300--Sobic007G114200 Sobic004G300900--Sobic002G078400 Sobic006G141500 Sobic006G141500 Sobic004G300900--Sobic006G141500 Sobic004G300900--Sobic009G198500 Sobic001G331900 Sobic001G331900 Sobic004G300900--Sobic001G331900 Sobic004G300900--Sobic001G005900 Sobic004G225500 Sobic004G225500 Sobic004G300900--Sobic004G225500 Sobic008G058300 Sobic008G058300 Sobic004G300900--Sobic008G058300 Sobic003G115800 Sobic003G115800 Sobic004G300900--Sobic003G115800 Sobic001G445800 Sobic001G445800 Sobic004G300900--Sobic001G445800 Sobic010G154700 Sobic010G154700 Sobic001G048832--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic001G048832--Sobic001G132100 Sobic007G051000 Sobic007G051000 Sobic001G048832--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic001G048832--Sobic009G176000 Sobic005G188100 Sobic005G188100 Sobic001G048832--Sobic005G188100 Sobic002G190900 Sobic002G190900 Sobic001G048832--Sobic002G190900 Sobic009G119900 Sobic009G119900 Sobic001G048832--Sobic009G119900 Sobic004G272800 Sobic004G272800 Sobic001G048832--Sobic004G272800 Sobic002G398901 Sobic002G398901 Sobic001G048832--Sobic002G398901 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic003G362400 Sobic003G362400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic002G078400--Sobic001G445800 Sobic002G078400--Sobic001G331900 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic001G502200--Sobic007G168600 Sobic004G224900 Sobic004G224900 Sobic001G502200--Sobic004G224900 Sobic001G502200--Sobic003G124800 Sobic001G458700 Sobic001G458700 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic001G502200--Sobic002G428200 Sobic001G502200--Sobic002G078400 Sobic006G252200 Sobic006G252200 Sobic001G502200--Sobic006G252200 Sobic004G130900--Sobic002G400000 Sobic004G130900--Sobic004G327300 Sobic003G261400 Sobic003G261400 Sobic004G130900--Sobic003G261400 Sobic004G130900--Sobic003G367451 Sobic004G130900--Sobic001G005900 Sobic004G130900--Sobic007G096700 Sobic004G130900--Sobic009G198500 Sobic010G000900 Sobic010G000900 Sobic004G130900--Sobic010G000900 Sobic004G130900--Sobic007G168600 Sobic007G096700--Sobic009G198500 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic007G096700--Sobic001G501200 Sobic007G096700--Sobic001G005900 Sobic007G096700--Sobic002G400000 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic007G096700--Sobic004G300900 Sobic001G501200--Sobic009G198500 Sobic001G501200--Sobic007G096700 Sobic001G501200--Sobic001G005900 Sobic001G501200--Sobic007G168600 Sobic001G428100 Sobic001G428100 Sobic001G501200--Sobic001G428100 Sobic001G501200--Sobic003G124800 Sobic001G501200--Sobic001G502200 Sobic001G501200--Sobic004G300900 Sobic004G130100 Sobic004G130100 Sobic001G501200--Sobic004G130100
Octagon: transcription factors


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