Gene annotation
Transcriptome id Sobic.008G058300.1
Synonym NRPD10, Sb08g004910, NRPE10, NRPB10
Functional annotation RNA polymerases N 8 kDa subunit, putative, expressed
UniProt C5YSU7
Pfam PF01194
Panther DB PTHR23431 PTHR23431:SF2
NCBI CDD KOG3497; DNA-directed RNA polymerase, subunit RPB10
KEGG Orthology K03007; RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G11475 : RNA polymerases N / 8 kDa subunit
RAP-DB (Rice) LOC_Os11g08940.1 : RNA polymerases N 8 kDa subunit, putative, expressed
MaizeGDB (Corn) Zm00025a039498
Brachypodium KQJ91997
Barley -
Wheat TraesCS5A02G114800 , TraesCS5D02G125400 , TraesCS5B02G115800
Populus -


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cDNA sequences
Sobic.008G058300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
2 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
3 Sobic.001G331900 expressed protein -
4 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
5 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
6 Sobic.010G029400 peptidase, T1 family, putative, expressed K02738: 20S proteasome subunit beta 1
7 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
8 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
9 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
10 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
11 Sobic.008G132800 expressed protein -
12 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
13 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
14 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
15 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
16 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
17 Sobic.009G050200 expressed protein K15141: mediator of RNA polymerase II transcription subunit 28
18 Sobic.002G007100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
19 Sobic.003G055500 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
20 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5


Gene co-expression network
sample Sobic008G058300 Sobic008G058300 Sobic005G157200 Sobic005G157200 Sobic008G058300--Sobic005G157200 Sobic003G025200 Sobic003G025200 Sobic008G058300--Sobic003G025200 Sobic001G331900 Sobic001G331900 Sobic008G058300--Sobic001G331900 Sobic006G052400 Sobic006G052400 Sobic008G058300--Sobic006G052400 Sobic004G300900 Sobic004G300900 Sobic008G058300--Sobic004G300900 Sobic010G029400 Sobic010G029400 Sobic008G058300--Sobic010G029400 Sobic004G002350 Sobic004G002350 Sobic008G058300--Sobic004G002350 Sobic002G078400 Sobic002G078400 Sobic008G058300--Sobic002G078400 Sobic001G377800 Sobic001G377800 Sobic008G058300--Sobic001G377800 Sobic005G157200--Sobic008G058300 Sobic005G157200--Sobic001G331900 Sobic005G157200--Sobic001G377800 Sobic005G157200--Sobic003G025200 Sobic002G406500 Sobic002G406500 Sobic005G157200--Sobic002G406500 Sobic007G163700 Sobic007G163700 Sobic005G157200--Sobic007G163700 Sobic005G157200--Sobic010G029400 Sobic004G107600 Sobic004G107600 Sobic005G157200--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic005G157200--Sobic001G529000 Sobic003G025200--Sobic001G377800 Sobic006G081100 Sobic006G081100 Sobic003G025200--Sobic006G081100 Sobic001G085400 Sobic001G085400 Sobic003G025200--Sobic001G085400 Sobic003G025200--Sobic002G406500 Sobic001G058900 Sobic001G058900 Sobic003G025200--Sobic001G058900 Sobic006G201500 Sobic006G201500 Sobic003G025200--Sobic006G201500 Sobic002G049300 Sobic002G049300 Sobic003G025200--Sobic002G049300 Sobic003G025200--Sobic008G058300 Sobic002G115000 Sobic002G115000 Sobic003G025200--Sobic002G115000 Sobic001G331900--Sobic004G107600 Sobic001G331900--Sobic005G157200 Sobic001G331900--Sobic008G058300 Sobic001G331900--Sobic002G078400 Sobic008G132800 Sobic008G132800 Sobic001G331900--Sobic008G132800 Sobic001G331900--Sobic004G300900 Sobic001G331900--Sobic001G377800 Sobic003G362400 Sobic003G362400 Sobic001G331900--Sobic003G362400 Sobic001G331900--Sobic001G529000 Sobic006G052400--Sobic008G058300 Sobic006G052400--Sobic001G058900 Sobic009G050200 Sobic009G050200 Sobic006G052400--Sobic009G050200 Sobic001G096100 Sobic001G096100 Sobic006G052400--Sobic001G096100 Sobic006G115000 Sobic006G115000 Sobic006G052400--Sobic006G115000 Sobic001G225700 Sobic001G225700 Sobic006G052400--Sobic001G225700 Sobic003G442400 Sobic003G442400 Sobic006G052400--Sobic003G442400 Sobic003G018600 Sobic003G018600 Sobic006G052400--Sobic003G018600 Sobic009G117000 Sobic009G117000 Sobic006G052400--Sobic009G117000 Sobic004G300900--Sobic002G078400 Sobic006G141500 Sobic006G141500 Sobic004G300900--Sobic006G141500 Sobic009G198500 Sobic009G198500 Sobic004G300900--Sobic009G198500 Sobic004G300900--Sobic001G331900 Sobic001G005900 Sobic001G005900 Sobic004G300900--Sobic001G005900 Sobic004G225500 Sobic004G225500 Sobic004G300900--Sobic004G225500 Sobic004G300900--Sobic008G058300 Sobic003G115800 Sobic003G115800 Sobic004G300900--Sobic003G115800 Sobic001G445800 Sobic001G445800 Sobic004G300900--Sobic001G445800 Sobic010G029400--Sobic008G132800 Sobic010G029400--Sobic002G078400 Sobic010G029400--Sobic003G025200 Sobic010G029400--Sobic002G406500 Sobic010G029400--Sobic002G115000 Sobic010G029400--Sobic005G157200 Sobic010G029400--Sobic008G058300 Sobic010G029400--Sobic001G377800 Sobic009G016201 Sobic009G016201 Sobic010G029400--Sobic009G016201 Sobic004G002350--Sobic003G025200 Sobic004G002350--Sobic002G049300 Sobic004G002350--Sobic001G377800 Sobic008G098800 Sobic008G098800 Sobic004G002350--Sobic008G098800 Sobic004G002350--Sobic003G018600 Sobic001G018800 Sobic001G018800 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic004G002350--Sobic006G115000 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic002G078400--Sobic008G132800 Sobic002G078400--Sobic001G445800 Sobic002G078400--Sobic001G331900 Sobic002G078400--Sobic009G198500 Sobic002G078400--Sobic010G029400 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G377800--Sobic001G085400 Sobic001G091801 Sobic001G091801 Sobic001G377800--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic001G377800--Sobic006G081100 Sobic001G377800--Sobic002G049300 Sobic009G050300 Sobic009G050300 Sobic001G377800--Sobic009G050300
Octagon: transcription factors


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