Gene annotation
Transcriptome id Sobic.009G050200.2
Synonym Sb09g004280
Functional annotation expressed protein
UniProt A0A1Z5R148
Pfam -
Panther DB PTHR39117
NCBI CDD -
KEGG Orthology K15141; mediator of RNA polymerase II transcription subunit 28
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52860 : -
RAP-DB (Rice) LOC_Os05g06290.1 : expressed protein
MaizeGDB (Corn) Zm00025a036906
Brachypodium KQK07404
Barley HORVU1Hr1G022410.1
Wheat TraesCS1B02G127600 , TraesCS1A02G096100 , TraesCS1D02G105100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
2 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
3 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
4 Sobic.001G331900 expressed protein -
5 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
6 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
7 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
8 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
9 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
10 Sobic.005G110800 - -
11 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
12 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
13 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
14 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
15 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
16 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
17 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
18 Sobic.003G073900 expressed protein -
19 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
20 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3


Gene co-expression network
sample Sobic009G050200 Sobic009G050200 Sobic003G018600 Sobic003G018600 Sobic009G050200--Sobic003G018600 Sobic006G052400 Sobic006G052400 Sobic009G050200--Sobic006G052400 Sobic008G058300 Sobic008G058300 Sobic009G050200--Sobic008G058300 Sobic001G331900 Sobic001G331900 Sobic009G050200--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic009G050200--Sobic005G157200 Sobic001G018800 Sobic001G018800 Sobic009G050200--Sobic001G018800 Sobic001G377800 Sobic001G377800 Sobic009G050200--Sobic001G377800 Sobic001G340500 Sobic001G340500 Sobic009G050200--Sobic001G340500 Sobic004G002350 Sobic004G002350 Sobic009G050200--Sobic004G002350 Sobic002G286900 Sobic002G286900 Sobic003G018600--Sobic002G286900 Sobic006G115000 Sobic006G115000 Sobic003G018600--Sobic006G115000 Sobic009G166500 Sobic009G166500 Sobic003G018600--Sobic009G166500 Sobic003G018600--Sobic001G377800 Sobic005G110800 Sobic005G110800 Sobic003G018600--Sobic005G110800 Sobic009G050300 Sobic009G050300 Sobic003G018600--Sobic009G050300 Sobic006G137100 Sobic006G137100 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic003G018600--Sobic003G249700 Sobic006G052400--Sobic008G058300 Sobic001G058900 Sobic001G058900 Sobic006G052400--Sobic001G058900 Sobic006G052400--Sobic009G050200 Sobic001G096100 Sobic001G096100 Sobic006G052400--Sobic001G096100 Sobic006G052400--Sobic006G115000 Sobic001G225700 Sobic001G225700 Sobic006G052400--Sobic001G225700 Sobic003G442400 Sobic003G442400 Sobic006G052400--Sobic003G442400 Sobic006G052400--Sobic003G018600 Sobic009G117000 Sobic009G117000 Sobic006G052400--Sobic009G117000 Sobic008G058300--Sobic005G157200 Sobic003G025200 Sobic003G025200 Sobic008G058300--Sobic003G025200 Sobic008G058300--Sobic001G331900 Sobic008G058300--Sobic006G052400 Sobic004G300900 Sobic004G300900 Sobic008G058300--Sobic004G300900 Sobic010G029400 Sobic010G029400 Sobic008G058300--Sobic010G029400 Sobic008G058300--Sobic004G002350 Sobic002G078400 Sobic002G078400 Sobic008G058300--Sobic002G078400 Sobic008G058300--Sobic001G377800 Sobic004G107600 Sobic004G107600 Sobic001G331900--Sobic004G107600 Sobic001G331900--Sobic005G157200 Sobic001G331900--Sobic008G058300 Sobic001G331900--Sobic002G078400 Sobic008G132800 Sobic008G132800 Sobic001G331900--Sobic008G132800 Sobic001G331900--Sobic004G300900 Sobic001G331900--Sobic001G377800 Sobic003G362400 Sobic003G362400 Sobic001G331900--Sobic003G362400 Sobic001G529000 Sobic001G529000 Sobic001G331900--Sobic001G529000 Sobic005G157200--Sobic008G058300 Sobic005G157200--Sobic001G331900 Sobic005G157200--Sobic001G377800 Sobic005G157200--Sobic003G025200 Sobic002G406500 Sobic002G406500 Sobic005G157200--Sobic002G406500 Sobic007G163700 Sobic007G163700 Sobic005G157200--Sobic007G163700 Sobic005G157200--Sobic010G029400 Sobic005G157200--Sobic004G107600 Sobic005G157200--Sobic001G529000 Sobic001G018800--Sobic001G340500 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic001G018800--Sobic003G018600 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G085400 Sobic001G085400 Sobic001G377800--Sobic001G085400 Sobic001G091801 Sobic001G091801 Sobic001G377800--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic006G081100 Sobic006G081100 Sobic001G377800--Sobic006G081100 Sobic002G049300 Sobic002G049300 Sobic001G377800--Sobic002G049300 Sobic001G377800--Sobic009G050300 Sobic001G340500--Sobic009G166500 Sobic001G340500--Sobic001G018800 Sobic002G081600 Sobic002G081600 Sobic001G340500--Sobic002G081600 Sobic001G340500--Sobic005G110800 Sobic001G340500--Sobic006G137100 Sobic001G340500--Sobic009G163800 Sobic003G346600 Sobic003G346600 Sobic001G340500--Sobic003G346600 Sobic006G147000 Sobic006G147000 Sobic001G340500--Sobic006G147000 Sobic001G340500--Sobic003G018600 Sobic004G002350--Sobic003G025200 Sobic004G002350--Sobic002G049300 Sobic004G002350--Sobic001G377800 Sobic008G098800 Sobic008G098800 Sobic004G002350--Sobic008G098800 Sobic004G002350--Sobic003G018600 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic004G002350--Sobic006G115000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.