Gene annotation
Transcriptome id Sobic.007G163700.1
Synonym Sb07g023720
Functional annotation zinc finger protein 593, putative, expressed
UniProt C5YMS7
Pfam PF12171
Panther DB PTHR20863 PTHR20863:SF2
NCBI CDD KOG3408; U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing
KEGG Orthology K14821; bud site selection protein 20
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36930 : zinc finger (C2H2 type) family protein
RAP-DB (Rice) LOC_Os08g45040.1 : zinc finger protein 593, putative, expressed
MaizeGDB (Corn) Zm00025a005527
Brachypodium KQJ94696
Barley HORVU4Hr1G006520.1 , HORVU0Hr1G007650.1
Wheat TraesCS4B02G041400 , TraesCS4D02G038700 , TraesCS4A02G272700
Populus -


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cDNA sequences
Sobic.007G163700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
2 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
3 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
4 Sobic.010G267900 expressed protein -
5 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
6 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
7 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
8 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
9 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
10 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
11 Sobic.004G196400 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
12 Sobic.006G211200 expressed protein -
13 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
14 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
15 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
16 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
17 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
18 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
19 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
20 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e


Gene co-expression network
sample Sobic007G163700 Sobic007G163700 Sobic006G231700 Sobic006G231700 Sobic007G163700--Sobic006G231700 Sobic001G517600 Sobic001G517600 Sobic007G163700--Sobic001G517600 Sobic005G157200 Sobic005G157200 Sobic007G163700--Sobic005G157200 Sobic010G267900 Sobic010G267900 Sobic007G163700--Sobic010G267900 Sobic001G529000 Sobic001G529000 Sobic007G163700--Sobic001G529000 Sobic001G128400 Sobic001G128400 Sobic007G163700--Sobic001G128400 Sobic003G362400 Sobic003G362400 Sobic007G163700--Sobic003G362400 Sobic002G373800 Sobic002G373800 Sobic007G163700--Sobic002G373800 Sobic003G018600 Sobic003G018600 Sobic007G163700--Sobic003G018600 Sobic005G111100 Sobic005G111100 Sobic006G231700--Sobic005G111100 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic003G358300 Sobic003G358300 Sobic006G231700--Sobic003G358300 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic001G436200 Sobic001G436200 Sobic001G517600--Sobic001G436200 Sobic001G517600--Sobic002G373800 Sobic003G109600 Sobic003G109600 Sobic001G517600--Sobic003G109600 Sobic004G032000 Sobic004G032000 Sobic001G517600--Sobic004G032000 Sobic002G406500 Sobic002G406500 Sobic001G517600--Sobic002G406500 Sobic005G050500 Sobic005G050500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100 Sobic008G058300 Sobic008G058300 Sobic005G157200--Sobic008G058300 Sobic001G331900 Sobic001G331900 Sobic005G157200--Sobic001G331900 Sobic001G377800 Sobic001G377800 Sobic005G157200--Sobic001G377800 Sobic003G025200 Sobic003G025200 Sobic005G157200--Sobic003G025200 Sobic005G157200--Sobic002G406500 Sobic005G157200--Sobic007G163700 Sobic010G029400 Sobic010G029400 Sobic005G157200--Sobic010G029400 Sobic004G107600 Sobic004G107600 Sobic005G157200--Sobic004G107600 Sobic005G157200--Sobic001G529000 Sobic010G267900--Sobic007G163700 Sobic010G267900--Sobic006G231700 Sobic010G267900--Sobic001G529000 Sobic003G055500 Sobic003G055500 Sobic010G267900--Sobic003G055500 Sobic006G052400 Sobic006G052400 Sobic010G267900--Sobic006G052400 Sobic010G267900--Sobic005G111100 Sobic010G267900--Sobic003G129800 Sobic004G066800 Sobic004G066800 Sobic010G267900--Sobic004G066800 Sobic010G267900--Sobic008G058300 Sobic001G529000--Sobic003G362400 Sobic004G248800 Sobic004G248800 Sobic001G529000--Sobic004G248800 Sobic003G124800 Sobic003G124800 Sobic001G529000--Sobic003G124800 Sobic001G529000--Sobic001G331900 Sobic001G529000--Sobic005G157200 Sobic001G529000--Sobic007G163700 Sobic010G039800 Sobic010G039800 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic004G300900 Sobic004G300900 Sobic001G529000--Sobic004G300900 Sobic001G128400--Sobic005G111100 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic010G054200 Sobic010G054200 Sobic001G128400--Sobic010G054200 Sobic003G280700 Sobic003G280700 Sobic001G128400--Sobic003G280700 Sobic001G128400--Sobic003G109600 Sobic002G078400 Sobic002G078400 Sobic003G362400--Sobic002G078400 Sobic003G362400--Sobic004G107600 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic003G362400--Sobic001G331900 Sobic010G213400 Sobic010G213400 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic002G373800--Sobic001G517600 Sobic010G173100 Sobic010G173100 Sobic002G373800--Sobic010G173100 Sobic002G373800--Sobic002G406500 Sobic002G263800 Sobic002G263800 Sobic002G373800--Sobic002G263800 Sobic002G373800--Sobic003G280700 Sobic002G373800--Sobic001G436200 Sobic002G373800--Sobic005G111100 Sobic001G011200 Sobic001G011200 Sobic002G373800--Sobic001G011200 Sobic002G374900 Sobic002G374900 Sobic002G373800--Sobic002G374900 Sobic002G286900 Sobic002G286900 Sobic003G018600--Sobic002G286900 Sobic006G115000 Sobic006G115000 Sobic003G018600--Sobic006G115000 Sobic009G166500 Sobic009G166500 Sobic003G018600--Sobic009G166500 Sobic003G018600--Sobic001G377800 Sobic005G110800 Sobic005G110800 Sobic003G018600--Sobic005G110800 Sobic009G050300 Sobic009G050300 Sobic003G018600--Sobic009G050300 Sobic006G137100 Sobic006G137100 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G018600--Sobic003G249700
Octagon: transcription factors


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