Gene annotation
Transcriptome id Sobic.004G196400.1
Synonym Sb04g024330
Functional annotation LSM domain containing protein, expressed
UniProt C5XWD2
Pfam PF01423
Panther DB PTHR23338
NCBI CDD KOG3428; Small nuclear ribonucleoprotein SMD1 and related snRNPs
KEGG Orthology K11087; SNRPD1, small nuclear ribonucleoprotein D1
Gene Ontology GO:0006396; RNA processing


Orthologs (automatic annotation)
TAIR AT4G02840 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os04g39444.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a031777
Brachypodium KQK00080
Barley HORVU6Hr1G051450.1 , HORVU6Hr1G051450.3 , HORVU6Hr1G051450.2
Wheat TraesCS6A02G207000 , TraesCS6B02G230500 , TraesCS6D02G188600
Populus -


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cDNA sequences
Sobic.004G196400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
2 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
3 Sobic.006G211200 expressed protein -
4 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
5 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
6 Sobic.001G537200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
7 Sobic.004G252100 ribosomal protein L7Ae, putative, expressed K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2
8 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
9 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
10 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
11 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
12 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
13 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
14 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
15 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
16 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
17 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
18 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
19 Sobic.004G104300 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
20 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20


Gene co-expression network
sample Sobic004G196400 Sobic004G196400 Sobic006G147000 Sobic006G147000 Sobic004G196400--Sobic006G147000 Sobic001G533500 Sobic001G533500 Sobic004G196400--Sobic001G533500 Sobic006G211200 Sobic006G211200 Sobic004G196400--Sobic006G211200 Sobic007G019000 Sobic007G019000 Sobic004G196400--Sobic007G019000 Sobic007G178600 Sobic007G178600 Sobic004G196400--Sobic007G178600 Sobic001G537200 Sobic001G537200 Sobic004G196400--Sobic001G537200 Sobic004G252100 Sobic004G252100 Sobic004G196400--Sobic004G252100 Sobic007G190800 Sobic007G190800 Sobic004G196400--Sobic007G190800 Sobic002G286900 Sobic002G286900 Sobic004G196400--Sobic002G286900 Sobic003G346600 Sobic003G346600 Sobic006G147000--Sobic003G346600 Sobic009G163800 Sobic009G163800 Sobic006G147000--Sobic009G163800 Sobic010G060500 Sobic010G060500 Sobic006G147000--Sobic010G060500 Sobic009G166500 Sobic009G166500 Sobic006G147000--Sobic009G166500 Sobic002G081600 Sobic002G081600 Sobic006G147000--Sobic002G081600 Sobic006G147000--Sobic007G178600 Sobic003G322400 Sobic003G322400 Sobic006G147000--Sobic003G322400 Sobic009G050300 Sobic009G050300 Sobic006G147000--Sobic009G050300 Sobic007G212600 Sobic007G212600 Sobic006G147000--Sobic007G212600 Sobic001G533500--Sobic007G019000 Sobic007G018300 Sobic007G018300 Sobic001G533500--Sobic007G018300 Sobic010G230700 Sobic010G230700 Sobic001G533500--Sobic010G230700 Sobic001G054900 Sobic001G054900 Sobic001G533500--Sobic001G054900 Sobic001G533500--Sobic009G050300 Sobic001G533500--Sobic007G178600 Sobic006G116700 Sobic006G116700 Sobic001G533500--Sobic006G116700 Sobic004G104100 Sobic004G104100 Sobic001G533500--Sobic004G104100 Sobic004G008400 Sobic004G008400 Sobic001G533500--Sobic004G008400 Sobic006G211200--Sobic006G147000 Sobic003G321700 Sobic003G321700 Sobic006G211200--Sobic003G321700 Sobic006G211200--Sobic007G190800 Sobic006G211200--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic006G211200--Sobic004G322200 Sobic010G259900 Sobic010G259900 Sobic006G211200--Sobic010G259900 Sobic006G211200--Sobic007G212600 Sobic001G016400 Sobic001G016400 Sobic006G211200--Sobic001G016400 Sobic006G211200--Sobic003G322400 Sobic007G019000--Sobic007G178600 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic007G019000--Sobic004G322200 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic007G019000--Sobic001G533500 Sobic007G178600--Sobic004G008400 Sobic007G178600--Sobic007G019000 Sobic007G178600--Sobic003G346600 Sobic007G178600--Sobic009G050300 Sobic008G108601 Sobic008G108601 Sobic007G178600--Sobic008G108601 Sobic006G221200 Sobic006G221200 Sobic007G178600--Sobic006G221200 Sobic007G178600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic007G178600--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic007G178600--Sobic002G047600 Sobic001G537200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic001G537200--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic001G537200--Sobic007G197800 Sobic002G379500 Sobic002G379500 Sobic001G537200--Sobic002G379500 Sobic009G215200 Sobic009G215200 Sobic001G537200--Sobic009G215200 Sobic001G537200--Sobic007G019000 Sobic001G537200--Sobic006G116700 Sobic001G130301 Sobic001G130301 Sobic001G537200--Sobic001G130301 Sobic001G403500 Sobic001G403500 Sobic001G537200--Sobic001G403500 Sobic001G016500 Sobic001G016500 Sobic004G252100--Sobic001G016500 Sobic005G019700 Sobic005G019700 Sobic004G252100--Sobic005G019700 Sobic004G252100--Sobic006G116700 Sobic004G252100--Sobic001G018900 Sobic004G252100--Sobic007G019000 Sobic004G252100--Sobic007G190800 Sobic004G252100--Sobic001G533500 Sobic004G252100--Sobic009G050300 Sobic004G252100--Sobic007G197800 Sobic007G190800--Sobic010G230700 Sobic007G190800--Sobic005G019700 Sobic007G190800--Sobic004G104100 Sobic007G190800--Sobic009G050300 Sobic004G104300 Sobic004G104300 Sobic007G190800--Sobic004G104300 Sobic007G190800--Sobic007G019000 Sobic007G190800--Sobic007G018300 Sobic007G190800--Sobic007G212600 Sobic007G190800--Sobic001G403500 Sobic006G137100 Sobic006G137100 Sobic002G286900--Sobic006G137100 Sobic002G286900--Sobic008G108601 Sobic002G286900--Sobic004G008400 Sobic002G286900--Sobic009G050300 Sobic001G226500 Sobic001G226500 Sobic002G286900--Sobic001G226500 Sobic002G286900--Sobic001G403500 Sobic002G286900--Sobic003G249700 Sobic005G110800 Sobic005G110800 Sobic002G286900--Sobic005G110800 Sobic002G286900--Sobic007G178600
Octagon: transcription factors


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