Gene annotation
Transcriptome id Sobic.001G537200.1
Synonym Sb01g049990
Functional annotation transcription factor BTF3, putative, expressed
UniProt C5WMP6
Pfam PF01849
Panther DB PTHR10351:SF50 PTHR10351
NCBI CDD KOG2240; RNA polymerase II general transcription factor BTF3 and related proteins
KEGG Orthology K01527; EGD1, nascent polypeptide-associated complex subunit beta
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17880 : basic transcription factor 3
RAP-DB (Rice) LOC_Os03g01910.1 : transcription factor BTF3, putative, expressed
MaizeGDB (Corn) Zm00025a000158 , Zm00025a053556
Brachypodium KQK24070
Barley HORVU4Hr1G090110.4 , HORVU4Hr1G090110.1 , HORVU4Hr1G090110.3 , HORVU4Hr1G090110.2
Wheat TraesCS5A02G550800 , TraesCS4B02G385900 , TraesCS4B02G385900
Populus -


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cDNA sequences
Sobic.001G537200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
2 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
3 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
4 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
5 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
6 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
7 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
8 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
9 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
10 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
11 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
12 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
13 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
14 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
15 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
16 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
17 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
18 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
19 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
20 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae


Gene co-expression network
sample Sobic001G537200 Sobic001G537200 Sobic009G050300 Sobic009G050300 Sobic001G537200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic001G537200--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic001G537200--Sobic007G197800 Sobic002G379500 Sobic002G379500 Sobic001G537200--Sobic002G379500 Sobic009G215200 Sobic009G215200 Sobic001G537200--Sobic009G215200 Sobic007G019000 Sobic007G019000 Sobic001G537200--Sobic007G019000 Sobic006G116700 Sobic006G116700 Sobic001G537200--Sobic006G116700 Sobic001G130301 Sobic001G130301 Sobic001G537200--Sobic001G130301 Sobic001G403500 Sobic001G403500 Sobic001G537200--Sobic001G403500 Sobic009G050300--Sobic006G116700 Sobic004G008400 Sobic004G008400 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic002G081600 Sobic002G081600 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500 Sobic001G018900--Sobic006G116700 Sobic001G018900--Sobic009G215200 Sobic001G018900--Sobic009G050300 Sobic001G036900 Sobic001G036900 Sobic001G018900--Sobic001G036900 Sobic001G018900--Sobic007G197800 Sobic002G375100 Sobic002G375100 Sobic001G018900--Sobic002G375100 Sobic001G018900--Sobic001G130301 Sobic001G016400 Sobic001G016400 Sobic001G018900--Sobic001G016400 Sobic003G408100 Sobic003G408100 Sobic001G018900--Sobic003G408100 Sobic007G197800--Sobic006G116700 Sobic007G197800--Sobic009G050300 Sobic007G197800--Sobic001G130301 Sobic007G197800--Sobic001G018900 Sobic007G197800--Sobic009G215200 Sobic001G402050 Sobic001G402050 Sobic007G197800--Sobic001G402050 Sobic007G197800--Sobic001G016400 Sobic007G197800--Sobic001G403500 Sobic007G197800--Sobic004G008400 Sobic002G379500--Sobic009G050300 Sobic006G213000 Sobic006G213000 Sobic002G379500--Sobic006G213000 Sobic002G056200 Sobic002G056200 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic002G379500--Sobic006G116700 Sobic003G109600 Sobic003G109600 Sobic002G379500--Sobic003G109600 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic002G379500--Sobic004G008400 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic009G215200--Sobic001G016400 Sobic001G374700 Sobic001G374700 Sobic009G215200--Sobic001G374700 Sobic007G178600 Sobic007G178600 Sobic007G019000--Sobic007G178600 Sobic001G054900 Sobic001G054900 Sobic007G019000--Sobic001G054900 Sobic007G019000--Sobic009G050300 Sobic004G322200 Sobic004G322200 Sobic007G019000--Sobic004G322200 Sobic007G018300 Sobic007G018300 Sobic007G019000--Sobic007G018300 Sobic004G103800 Sobic004G103800 Sobic007G019000--Sobic004G103800 Sobic010G230700 Sobic010G230700 Sobic007G019000--Sobic010G230700 Sobic002G115000 Sobic002G115000 Sobic007G019000--Sobic002G115000 Sobic001G533500 Sobic001G533500 Sobic007G019000--Sobic001G533500 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic002G200600 Sobic002G200600 Sobic006G116700--Sobic002G200600 Sobic006G116700--Sobic001G036900 Sobic001G130301--Sobic009G215200 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G130301--Sobic001G018900 Sobic001G493001 Sobic001G493001 Sobic001G130301--Sobic001G493001 Sobic001G130301--Sobic001G402050 Sobic001G130301--Sobic009G050300 Sobic001G130301--Sobic002G200600 Sobic001G130301--Sobic001G374700 Sobic001G403500--Sobic009G050300 Sobic001G403500--Sobic004G198400 Sobic001G403500--Sobic009G215200 Sobic001G403500--Sobic002G379500 Sobic001G403500--Sobic007G197800 Sobic001G403500--Sobic002G081600 Sobic006G137100 Sobic006G137100 Sobic001G403500--Sobic006G137100 Sobic001G403500--Sobic006G116700 Sobic010G206200 Sobic010G206200 Sobic001G403500--Sobic010G206200
Octagon: transcription factors


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